View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9961_low_49 (Length: 238)
Name: NF9961_low_49
Description: NF9961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9961_low_49 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 33456564 - 33456339
Alignment:
| Q |
1 |
tcctaatccacctccttgtaaatgatgatgatgaacactaccaagattcttgtaagaagttcctggtcctccttgattgtaatatagaaaaccaccagca |
100 |
Q |
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| T |
33456564 |
tcctaatccacctccttgtaaatgatgatgatgaacactaccaagattcttgtaagaagttcctggtcctccttgattgtaatatagaaaaccaccagca |
33456465 |
T |
|
| Q |
101 |
gcagcatctcccattcttaaatcctctgaatgatgatgttgtaacgaagacgataacgacaacgaaaggccttgtccttcaacaacacttgccatttctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33456464 |
gcagcatctcccattcttaaatcctctgaatgatgatgttgtaaggaagacgataacgacaacgaaagaccttgtccttcaacaacacttgccatttctg |
33456365 |
T |
|
| Q |
201 |
gttggttgttgttgagttggtgatga |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
33456364 |
gttggttgttgttgagttggtgatga |
33456339 |
T |
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