View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9961_low_5 (Length: 605)
Name: NF9961_low_5
Description: NF9961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9961_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 7 - 588
Target Start/End: Original strand, 28591006 - 28591585
Alignment:
| Q |
7 |
agaagcagagacaccttgaaattcaacaactgatttattaagatcatgttcatcaccgaaaaacaccgaagtagagttaagatcatatagtaaaccagaa |
106 |
Q |
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| T |
28591006 |
agaaccagaaacaccttgaaattcaacaactgatttattaagatcatgtttatcaccgaaaaacaccgaagtagagttaagatcatatagtaaaccagaa |
28591105 |
T |
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| Q |
107 |
ttccgattcttctcaacaaaatctcccatcttcgccgaatccatgaaactcatcaaacctnnnnnnnnnntgattaaggagtgtttggttaaaaggaaga |
206 |
Q |
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| T |
28591106 |
ttccgattcttctcaacaaaatctcccatcttcgccgaatccatgaaactcatcaaacctaaaaaaaaaatgattaaggagtgtttggttaaaaggaaga |
28591205 |
T |
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| Q |
207 |
agttgaaaaatggcgtaagagttaagttaccattggcattgacatagaagttatcgtaatgagagtcggtgtggaattgaggaaaatgtgagttaagcag |
306 |
Q |
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| T |
28591206 |
agttgaaaaatggcgttagagttaagttaccattggcattgacatagaagttatcgtaatgagagtcggtgtggaattgaggaaaatgtgagttaagcag |
28591305 |
T |
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| Q |
307 |
ttcagttggagacaaaggaaacgtaagcaagttagtagaattagaagaagccattttcaaatttaacggtttttccgcgcaaagaaacaaatagagtgta |
406 |
Q |
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| T |
28591306 |
ttcagttggagacaaaggaaacgtaagcaagttagtagaattagaagaagccattttcaaatttaacggtttttccgcgcaaagaaacaaatagagtgta |
28591405 |
T |
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| Q |
407 |
aaagtcaaataactaaatttgtatgagagtttgagcttataagaggagttattaattagttggtttatgaggattaattaaggaagattgagataaatgt |
506 |
Q |
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| T |
28591406 |
aaagtcaaataactaaatttgtatgagagtttgagcttataagaggagttattaattagttggtttatgaggattaattaaggaagattaagataaatgt |
28591505 |
T |
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| Q |
507 |
gatgtgtaatgaagagtgagtaagaatgcatgcaaactttttgtaattgaaaagagagagtaaagcacgtaaatacgacaat |
588 |
Q |
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| T |
28591506 |
gatgtgtaatgaagagtgagtaaaaatgcatgcgaactttttgtaattgaaa--agagagtaaagcacgtaaatacgacaat |
28591585 |
T |
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