View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9961_low_51 (Length: 234)
Name: NF9961_low_51
Description: NF9961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9961_low_51 |
 | |
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| [»] scaffold0007 (1 HSPs) |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 29471314 - 29471515
Alignment:
| Q |
18 |
gagcccaatgcaatcttcacatgtagaatatatttgtctgaggaactgcaaattttcagatgaatatttgtcaacgggtctcatgttgtttactaatgtg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29471314 |
gagcccaatgcaatcttcacatgtagaatatatttgtctgaggaactgcaaattttcagatgaatatttgtcaacgggtctcatgttgtttactaatgtg |
29471413 |
T |
|
| Q |
118 |
aaagaattacacctaagtgataaccaattcaaaattcttccaaaatctatcgaaaaatgtcattttttacagaggcttgtcctggataactgtgaggaac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29471414 |
aaagaattacacctaagtgataaccaattcaaaattcttccaaaatctatcgaaaaatgtcattttttacagaggcttgtcctggataactgtgaggaac |
29471513 |
T |
|
| Q |
218 |
tt |
219 |
Q |
| |
|
|| |
|
|
| T |
29471514 |
tt |
29471515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 28 - 219
Target Start/End: Complemental strand, 29663499 - 29663308
Alignment:
| Q |
28 |
caatcttcacatgtagaatatatttgtctgaggaactgcaaattttcagatgaatatttgtcaacgggtctcatgttgtttactaatgtgaaagaattac |
127 |
Q |
| |
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||||||| ||| ||||||||||||||||| || || || ||| || ||||||| || ||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
29663499 |
caatctttacacgtagaatatatttgtcttagaaattgaaaagttccagatgagtacttgtcaataggtctcatgttgtttgctaatgtgaaagaattac |
29663400 |
T |
|
| Q |
128 |
acctaagtgataaccaattcaaaattcttccaaaatctatcgaaaaatgtcattttttacagaggcttgtcctggataactgtgaggaactt |
219 |
Q |
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| T |
29663399 |
acctaaatgaaagtcaattcacgtttcttcctaaatctttcgaaaaatgtcattttttatggaggcctgtcttggataattgtaaggaactt |
29663308 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 24 - 186
Target Start/End: Complemental strand, 29767925 - 29767763
Alignment:
| Q |
24 |
aatgcaatcttcacatgtagaatatatttgtctgaggaactgcaaattttcagatgaatatttgtcaacgggtctcatgttgtttactaatgtgaaagaa |
123 |
Q |
| |
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||||||||||||||||||| | ||||||||| | |||||||||||| |||||||||||||| |||||| |||||||||||||| |||||||||||||| |
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| T |
29767925 |
aatgcaatcttcacatgtaaagtatatttgtgtcaggaactgcaaactttcagatgaatatctgtcaataagtctcatgttgtttgctaatgtgaaagaa |
29767826 |
T |
|
| Q |
124 |
ttacacctaagtgataaccaattcaaaattcttccaaaatctatcgaaaaatgtcatttttta |
186 |
Q |
| |
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||||| ||| | | ||||||| | || |||| |||||||| ||||||||||| |||||| |
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|
| T |
29767825 |
ctacacataactaactgtcaattcacagttattcctaaatctattgaaaaatgtcaattttta |
29767763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 29689949 - 29689784
Alignment:
| Q |
18 |
gagcccaatgcaatcttcacatgtagaatatatttgtctgaggaactgcaaattttcagatgaatatttgtcaacgggtctcatgttgtttactaatgtg |
117 |
Q |
| |
|
||||||||| ||||||||||||||| | ||||||||| ||| ||| |||||| |||||||||||||| |||||| ||||||||||||| |||||||| |
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| T |
29689949 |
gagcccaatacaatcttcacatgtaaagtatatttgtgtgaagaaatgcaaactttcagatgaatatctgtcaaaaactctcatgttgtttgctaatgtg |
29689850 |
T |
|
| Q |
118 |
aaagaattacacctaagtgataaccaattcaaaattcttccaaaatctatcgaaaaatgtcatttt |
183 |
Q |
| |
|
|||||||||||||||| | | | |||||| | || |||| |||||||| ||||||||| ||||| |
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| T |
29689849 |
aaagaattacacctaactaacagtaaattcacagttattcctaaatctattgaaaaatgtaatttt |
29689784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 185
Target Start/End: Complemental strand, 28488235 - 28488073
Alignment:
| Q |
23 |
caatgcaatcttcacatgtagaatatatttgtctgaggaactgcaaattttcagatgaatatttgtcaacgggtctcatgttgtttactaatgtgaaaga |
122 |
Q |
| |
|
|||| |||||| |||||||| | |||||||| | ||| |||||||| |||||||||||||| ||||| ||||||||||||| ||||||||||||| |
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| T |
28488235 |
caatccaatctgcacatgtaaagtatatttgcatcagggactgcaaactttcagatgaatatctgtcactaaatctcatgttgtttgctaatgtgaaaga |
28488136 |
T |
|
| Q |
123 |
attacacctaagtgataaccaattcaaaattcttccaaaatctatcgaaaaatgtcatttttt |
185 |
Q |
| |
|
||||||||||| | | | ||||||| | ||||||| |||||||| ||||||||||||||||| |
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|
| T |
28488135 |
attacacctaactaacattcaattcacagttcttcctaaatctattgaaaaatgtcatttttt |
28488073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 185
Target Start/End: Complemental strand, 29800647 - 29800485
Alignment:
| Q |
23 |
caatgcaatcttcacatgtagaatatatttgtctgaggaactgcaaattttcagatgaatatttgtcaacgggtctcatgttgtttactaatgtgaaaga |
122 |
Q |
| |
|
|||| |||||| |||||||| | |||||||| | ||| |||||||| |||||||||||||| ||||| ||||||||||||| ||||||||||||| |
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|
| T |
29800647 |
caatccaatctgcacatgtaaagtatatttgcatcagggactgcaaactttcagatgaatatctgtcactaaatctcatgttgtttgctaatgtgaaaga |
29800548 |
T |
|
| Q |
123 |
attacacctaagtgataaccaattcaaaattcttccaaaatctatcgaaaaatgtcatttttt |
185 |
Q |
| |
|
||||||||||| | | | ||||||| | ||||||| |||||||| ||||||||||||||||| |
|
|
| T |
29800547 |
attacacctaactaacattcaattcacagttcttcctaaatctattgaaaaatgtcatttttt |
29800485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 219
Target Start/End: Complemental strand, 29719134 - 29718938
Alignment:
| Q |
23 |
caatgcaatcttcacatgtagaatatatttgtctgaggaactgc-aaattttcagatgaatatttgtcaacgggtctcatgttgtttactaatgtgaaag |
121 |
Q |
| |
|
|||||||||||||| ||||| | ||||||||| | ||||| ||| ||| |||||||||||| ||||||| ||| ||||||||| | |||||||||| |
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|
| T |
29719134 |
caatgcaatcttcaaatgtaaagtatatttgtgtcaggaa-tgctaaactttcagatgaattattgtcaaaaactcttatgttgtttgccaatgtgaaag |
29719036 |
T |
|
| Q |
122 |
aattacacctaagtgataaccaattcaaaattcttccaaaatctatcgaaaaatgtcattttttacagaggcttgtcctggataactgtgaggaactt |
219 |
Q |
| |
|
|||||||||||| | || ||| ||| |||| |||| |||||||| ||||||||||| |||||| || |||||| ||||| | ||| |||||||| |
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|
| T |
29719035 |
aattacacctaacaaacaatcaactcacaattattcctaaatctattgaaaaatgtcaatttttatggaaacttgtcttggatgattgtaaggaactt |
29718938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 185
Target Start/End: Complemental strand, 29756367 - 29756254
Alignment:
| Q |
72 |
ttcagatgaatatttgtcaacgggtctcatgttgtttactaatgtgaaagaattacacctaagtgataaccaattcaaaattcttccaaaatctatcgaa |
171 |
Q |
| |
|
|||||| |||||| |||||| |||| ||||||||| |||||||||||||||||||| ||| | ||| || |||| | || |||| |||||||| ||| |
|
|
| T |
29756367 |
ttcagaggaatatctgtcaaaaagtcttatgttgtttgctaatgtgaaagaattacacttaactagtaatcatttcacagttattcctaaatctattgaa |
29756268 |
T |
|
| Q |
172 |
aaatgtcatttttt |
185 |
Q |
| |
|
|| ||||| ||||| |
|
|
| T |
29756267 |
aattgtcaattttt |
29756254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 23 - 219
Target Start/End: Original strand, 618218 - 618414
Alignment:
| Q |
23 |
caatgcaatcttcacatgtagaatatatttgtctgaggaactgcaaattttcagatgaatatttgtcaacgggtctcatgttgtttactaatgtgaaaga |
122 |
Q |
| |
|
|||||||||||||||||||| | |||||||| | |||||||||||| |||||||||||||| |||||| |||| ||||||||| ||||||||||||| |
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|
| T |
618218 |
caatgcaatcttcacatgtaaagcatatttgtgtcaggaactgcaaactttcagatgaatatctgtcaaaaagtcttatgttgtttgctaatgtgaaaga |
618317 |
T |
|
| Q |
123 |
attacacctaagtgataaccaattcaaaattcttccaaaatctatcgaaaaatgtcattttttacagaggcttgtcctggataactgtgaggaactt |
219 |
Q |
| |
|
||||||||||| | | || ||||||| | ||||||| ||||||||||||||||||||| ||||| |||||||||| ||||| | |||||||||||| |
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|
| T |
618318 |
attacacctaactaaaaatcaattcacagttcttcctaaatctatcgaaaaatgtcatcttttatggaggcttgtcttggatgattgtgaggaactt |
618414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 74501 - 74699
Alignment:
| Q |
18 |
gagcccaatgcaatcttcacatgtagaatatatttgtctgaggaactgcaaattttcagatgaatatttgtcaacgggtctcatgttgtttactaatgtg |
117 |
Q |
| |
|
|||||| | |||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||| |||| || ||||||||||| ||||||| |
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|
| T |
74501 |
gagcccgaagcaatcttcacaagtagaatatatttgtctcaggaactgcaaactttcagatgaatatttttcaataagtttcatgttgtttgctaatgta |
74600 |
T |
|
| Q |
118 |
aaagaattacacctaagtgataaccaattcaaaattcttccaaaatctatcgaaaaatgtcattttttacagaggcttgtcctggataactgtgaggaa |
216 |
Q |
| |
|
|||||||||||||||| ||| || ||||||| | ||||||| |||||||| || |||||| |||||||| |||||||||| ||||| | ||||||||| |
|
|
| T |
74601 |
aaagaattacacctaactgaaaatcaattcacagttcttcctaaatctattgagaaatgtaattttttatggaggcttgtcttggatgattgtgaggaa |
74699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 26 - 186
Target Start/End: Original strand, 12591756 - 12591916
Alignment:
| Q |
26 |
tgcaatcttcacatgtagaatatatttgtctgaggaactgcaaattttcagatgaatatttgtcaacgggtctcatgttgtttactaatgtgaaagaatt |
125 |
Q |
| |
|
||||||||||| ||||| | ||||||||| || | ||||||||| ||||| ||||| || |||||| |||||| |||||| |||||||| ||||||| |
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|
| T |
12591756 |
tgcaatcttcaaatgtaaagtatatttgtgtgggaaactgcaaactttcatatgaaaatctgtcaaaaattctcatcttgttttctaatgtgcaagaatt |
12591855 |
T |
|
| Q |
126 |
acacctaagtgataaccaattcaaaattcttccaaaatctatcgaaaaatgtcatttttta |
186 |
Q |
| |
|
|||||||| | | | ||||||||| ||||||| || | ||||||| |||||||||||||| |
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|
| T |
12591856 |
acacctaactaactatcaattcaaagttcttcctaattgtatcgaagaatgtcatttttta |
12591916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 133
Target Start/End: Complemental strand, 209984 - 209874
Alignment:
| Q |
23 |
caatgcaatcttcacatgtagaatatatttgtctgaggaactgcaaattttcagatgaatatttgtcaacgggtctcatgttgtttactaatgtgaaaga |
122 |
Q |
| |
|
|||||||||||| ||||||| | ||||||||| | |||| ||||| |||||||||||||| |||||| |||| ||||| ||| ||||||||||||| |
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|
| T |
209984 |
caatgcaatctttacatgtaaagtatatttgtgtcaggaggtgcaatctttcagatgaatatctgtcaaaaagtcttatgttatttgctaatgtgaaaga |
209885 |
T |
|
| Q |
123 |
attacacctaa |
133 |
Q |
| |
|
||||||||||| |
|
|
| T |
209884 |
attacacctaa |
209874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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