View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9961_low_63 (Length: 212)
Name: NF9961_low_63
Description: NF9961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9961_low_63 |
 | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
| [»] scaffold0061 (1 HSPs) |
| | |
|
| [»] scaffold0017 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 38348550 - 38348744
Alignment:
| Q |
1 |
cattttcacgtcattcagaattcaattttaaaattcttctctgaaatctctcttatattttattgaaacacttttcttcttagcatannnnnnnncatca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38348550 |
cattttcacgtcattcagaattcaattttgaaattcttctctgaaatctctcttatattttattgaaacacttttcttcttagcatattttttttcatca |
38348649 |
T |
|
| Q |
101 |
ctctaatttcaaaaattgattcaatttatgatatcaatccactaaatgttgtggatatccatgtattttgtccaaattcacatattcgccctatg |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38348650 |
ctctaatttcaaaaattgattcaatttatgatatcaatccactaaatgttgtggatatccatgtattttgtccaaattcacatattcgccctatg |
38348744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 20788078 - 20787884
Alignment:
| Q |
1 |
cattttcacgtcattcagaattcaattttaaaattcttctctgaaatctctcttatattttattgaaacacttttcttcttagcatannnnnnnncatca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
20788078 |
cattttcacgtcattcagaattcaattttaaaattcttctctgaaatctctcttatattttattgaaacacttttcttcttagcatattttttttcatca |
20787979 |
T |
|
| Q |
101 |
ctctaatttcaaaaattgattcaatttatgatatcaatccactaaatgttgtggatatccatgtattttgtccaaattcacatattcgccctatg |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
20787978 |
ctctaatttcaaaaattgattcaatttatgatatcaatccactaaatgttgtggatatccatgtattttgtccaaattcatatattcaccctatg |
20787884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 10028580 - 10028388
Alignment:
| Q |
1 |
cattttcacgtcattcagaattcaattttaaaattcttctctgaaatctctcttatattttattgaaacacttttcttcttagcatannnnnnnncatca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10028580 |
cattttcacgtcattcagaattcaattttgaaattcttctctaaaatctctcttttattttattgaaacacttttcttcttagcatattttttt-catca |
10028482 |
T |
|
| Q |
101 |
ctctaatttcaaaaattgattcaatttatgatatcaatccactaaatgttgtggatatccatgtattttgtccaaattcacatattcgccctatg |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10028481 |
ctctaatttcaaaaattgattcaatttatgatatcaatccactacat-ttgtggatatccatgtattttgtccaagttcacatattcgccctatg |
10028388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 42614621 - 42614815
Alignment:
| Q |
1 |
cattttcacgtcattcagaattcaattttaaaattcttctctgaaatctctcttatattttattgaaacacttttcttcttagcatannnnnnnncatca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
42614621 |
cattttcacgtcattcagaattcaattttgaaattcttctctaaaatctctcttatattttattgaaacacttttcttcttagcatattttttttcatca |
42614720 |
T |
|
| Q |
101 |
ctctaatttcaaaaattgattcaatttatgatatcaatccactaaatgttgtggatatccatgtattttgtccaaattcacatattcgccctatg |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42614721 |
ctctaatttcaaaaattgattcaatttatgatatcaatccactaaatgttgtggatatccatgtattttgtccaaattcacatattcgccctatg |
42614815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 17990308 - 17990502
Alignment:
| Q |
1 |
cattttcacgtcattcagaattcaattttaaaattcttctctgaaatctctcttatattttattgaaacacttttcttcttagcatannnnnnnncatca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
17990308 |
cattttcacgtcattcagaattcaattttgaaattcttctctgaaatctctcttatattttattgaaacacttttcttcttagcatattttttttcatca |
17990407 |
T |
|
| Q |
101 |
ctctaatttcaaaaattgattcaatttatgatatcaatccactaaatgttgtggatatccatgtattttgtccaaattcacatattcgccctatg |
195 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17990408 |
ctctaatttcaaaagctgattcaatttatgatatcaatccactaaatgttgtggatatccatgtattttgtccaaattcacatattcgccctatg |
17990502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 18072681 - 18072487
Alignment:
| Q |
1 |
cattttcacgtcattcagaattcaattttaaaattcttctctgaaatctctcttatattttattgaaacacttttcttcttagcatannnnnnnncatca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
18072681 |
cattttcacgtcattcagaattcaattttgaaattcttctctgaaatctctcttatattttattgaaacacttttcttcttagcatattttttttcatca |
18072582 |
T |
|
| Q |
101 |
ctctaatttcaaaaattgattcaatttatgatatcaatccactaaatgttgtggatatccatgtattttgtccaaattcacatattcgccctatg |
195 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18072581 |
ctctaatttcaaaagctgattcaatttatgatatcaatccactaaatgttgtggatatccatgtattttgtccaaattcacatattcgccctatg |
18072487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 159; Significance: 7e-85; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 58487 - 58293
Alignment:
| Q |
1 |
cattttcacgtcattcagaattcaattttaaaattcttctctgaaatctctcttatattttattgaaacacttttcttcttagcatannnnnnnncatca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
58487 |
cattttcacgtcattcagaattcaattttgaaattcttctctgaaatctctcttatattttattgaaacacttttcttcttagcatattttttttcatca |
58388 |
T |
|
| Q |
101 |
ctctaatttcaaaaattgattcaatttatgatatcaatccactaaatgttgtggatatccatgtattttgtccaaattcacatattcgccctatg |
195 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
58387 |
ctctaatttcaaaagctgattcaatttatgatatcaatccactaaatgttgtggatatccatgtattttgtccaaattcacatattcgccctatg |
58293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 159; Significance: 7e-85; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 27428876 - 27429070
Alignment:
| Q |
1 |
cattttcacgtcattcagaattcaattttaaaattcttctctgaaatctctcttatattttattgaaacacttttcttcttagcatannnnnnnncatca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27428876 |
cattttcacgtcattcagaattcaattttgaaattcttctctgaaatctctcttatattttattgaaacacttttcttcttagcatattttttttcatca |
27428975 |
T |
|
| Q |
101 |
ctctaatttcaaaaattgattcaatttatgatatcaatccactaaatgttgtggatatccatgtattttgtccaaattcacatattcgccctatg |
195 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27428976 |
ctctaatttcaaaagctgattcaatttatgatatcaatccactaaatgttgtggatatccatgtattttgtccaaattcacatattcgccctatg |
27429070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 2 - 195
Target Start/End: Original strand, 12515205 - 12515399
Alignment:
| Q |
2 |
attttcacgtcattcagaattcaattttaaaattcttctctgaaatctctcttatattttattgaaacacttttcttcttagcatannnnnnnn-catca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
12515205 |
attttcacgtcattcagaattcaattttgaaattcttctatgaaatctctcttttattttattgaaacacttttcttcgtagcatatttttttttcatca |
12515304 |
T |
|
| Q |
101 |
ctctaatttcaaaaattgattcaatttatgatatcaatccactaaatgttgtggatatccatgtattttgtccaaattcacatattcgccctatg |
195 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
12515305 |
ctctaattccaaaaattgattcaatttatgatatcaatccattaaatgttgtggatatccatgtattttgtccaaatacacatattcgccctatg |
12515399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 159; Significance: 7e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 40700329 - 40700523
Alignment:
| Q |
1 |
cattttcacgtcattcagaattcaattttaaaattcttctctgaaatctctcttatattttattgaaacacttttcttcttagcatannnnnnnncatca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
40700329 |
cattttcacgtcattcagaattcaattttgaaattcttctctaaaatctctcttatattttattgaaacacttttcttcttagcatattttttttcatca |
40700428 |
T |
|
| Q |
101 |
ctctaatttcaaaaattgattcaatttatgatatcaatccactaaatgttgtggatatccatgtattttgtccaaattcacatattcgccctatg |
195 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40700429 |
ctttaatttcaaaaattgattcaatttatgatatcaatccactaaatgttgtggatatccatgtattttgtccaaattcacatattcgccctatg |
40700523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 139; Significance: 6e-73; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 35040 - 35234
Alignment:
| Q |
1 |
cattttcacgtcattcagaattcaattttaaaattcttctctgaaatctctcttatattttattgaaacacttttcttcttagcatannnnnnnncatca |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35040 |
cattttcacgtcattcagaaatcaattttgaaattcttctctgaaatctctcttttattttattgaaacacttttcttcttagcatattttttttcatca |
35139 |
T |
|
| Q |
101 |
ctctaatttcaaaaattgattcaatttatgatatcaatccactaaatgttgtggatatccatgtattttgtccaaattcacatattcgccctatg |
195 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||| |
|
|
| T |
35140 |
ctctaattttaaaaattaattcaatttatgatatcaatccactaaatgttgtggatatccatgtattttgtccaaatacacatatttgtcctatg |
35234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 139; Significance: 6e-73; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 163739 - 163545
Alignment:
| Q |
1 |
cattttcacgtcattcagaattcaattttaaaattcttctctgaaatctctcttatattttattgaaacacttttcttcttagcatannnnnnnncatca |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
163739 |
cattttcacgtcattcagaaatcaattttgaaattcttctctgaaatctctcttttattttattgaaacacttttcttcttagcatattttttttcatca |
163640 |
T |
|
| Q |
101 |
ctctaatttcaaaaattgattcaatttatgatatcaatccactaaatgttgtggatatccatgtattttgtccaaattcacatattcgccctatg |
195 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||| |
|
|
| T |
163639 |
ctctaattttaaaaattaattcaatttatgatatcaatccactaaatgttgtggatatccatgtattttgtccaaatacacatatttgtcctatg |
163545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 24 - 195
Target Start/End: Complemental strand, 12164946 - 12164777
Alignment:
| Q |
24 |
aattttaaaattcttctctgaaatctctcttatattttattgaaacacttttcttcttagcatannnnnnnncatcactctaatttcaaaaattgattca |
123 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||| |
|
|
| T |
12164946 |
aattttaaaattcttctca-aaatctctcttttattttattgaaacacttttcttcttaacatattttttt-catcactctaatttcgaaaattgattca |
12164849 |
T |
|
| Q |
124 |
atttatgatatcaatccactaaatgttgtggatatccatgtattttgtccaaattcacatattcgccctatg |
195 |
Q |
| |
|
||||||||||| | ||||||| ||||||| ||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
12164848 |
atttatgatattactccactacatgttgtatatatccatgtattttgttcaaattcacatattcaccctatg |
12164777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 24 - 195
Target Start/End: Complemental strand, 12409374 - 12409205
Alignment:
| Q |
24 |
aattttaaaattcttctctgaaatctctcttatattttattgaaacacttttcttcttagcatannnnnnnncatcactctaatttcaaaaattgattca |
123 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||| |
|
|
| T |
12409374 |
aattttaaaattcttctca-aaatctctcttttattttattgaaacacttttcttcttaacatattttttt-catcactctaatttcgaaaattgattca |
12409277 |
T |
|
| Q |
124 |
atttatgatatcaatccactaaatgttgtggatatccatgtattttgtccaaattcacatattcgccctatg |
195 |
Q |
| |
|
||||||||||| | ||||||| ||||||| ||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
12409276 |
atttatgatattactccactacatgttgtatatatccatgtattttgttcaaattcacatattcaccctatg |
12409205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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