View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9961_low_64 (Length: 202)
Name: NF9961_low_64
Description: NF9961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9961_low_64 |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 1e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 18209316 - 18209143
Alignment:
| Q |
19 |
acaaaagatccaattagtcatagaatgatttcgttatgtacattaattattctaaaatagttttgagattgtaatatcagatatgaactacctccaaatt |
118 |
Q |
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|||||||| |||||||||||||| |||||||| ||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
18209316 |
acaaaagaaccaattagtcataggatgatttccttatgaacattaattaatctaaaatagttatgagattgtaatatcagatatgaactacctccaaatt |
18209217 |
T |
|
| Q |
119 |
atacttagatatgaattgttcgatgacaccaacatcgtcagatgccttcttaacgatataattcctatgcttct |
192 |
Q |
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||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
18209216 |
atacttagacatgaactgttcgatgacaccaacatcgtcagatgccttcttaacggcataattcctatacttct |
18209143 |
T |
|
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Target: chr1 (Bit Score: 126; Significance: 3e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 3e-65
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 37899465 - 37899638
Alignment:
| Q |
19 |
acaaaagatccaattagtcatagaatgatttcgttatgtacattaattattctaaaatagttttgagattgtaatatcagatatgaactacctccaaatt |
118 |
Q |
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|||||||| |||||||||||||| |||||||| ||||| |||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37899465 |
acaaaagaaccaattagtcataggatgatttccttatgaacattaattaatctaaaacagttatgagattgtaatatcagatatgaactacctccaaatt |
37899564 |
T |
|
| Q |
119 |
atacttagatatgaattgttcgatgacaccaacatcgtcagatgccttcttaacgatataattcctatgcttct |
192 |
Q |
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||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
37899565 |
atacttagacatgaactgttcgatgacaccaacatcgtcagatgccttcttaacggcataattcctatacttct |
37899638 |
T |
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