View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9961_low_8 (Length: 466)

Name: NF9961_low_8
Description: NF9961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9961_low_8
NF9961_low_8
[»] chr5 (16 HSPs)
chr5 (47-460)||(1600915-1601324)
chr5 (130-460)||(8528025-8528355)
chr5 (142-460)||(8534601-8534920)
chr5 (49-141)||(8527735-8527827)
chr5 (255-432)||(8640694-8640871)
chr5 (255-343)||(9002563-9002651)
chr5 (172-339)||(9075116-9075281)
chr5 (56-126)||(15618506-15618576)
chr5 (255-305)||(8548785-8548835)
chr5 (255-315)||(8677560-8677620)
chr5 (255-305)||(8550856-8550906)
chr5 (87-141)||(8534346-8534399)
chr5 (222-315)||(8636303-8636396)
chr5 (255-292)||(8640467-8640504)
chr5 (255-288)||(9002300-9002333)
chr5 (275-315)||(8643817-8643857)
[»] chr7 (4 HSPs)
chr7 (195-460)||(48362374-48362638)
chr7 (47-141)||(48362867-48362961)
chr7 (255-311)||(35777552-35777608)
chr7 (66-141)||(35777257-35777332)
[»] chr4 (2 HSPs)
chr4 (130-460)||(9442192-9442516)
chr4 (84-141)||(9441937-9441994)
[»] chr6 (1 HSPs)
chr6 (255-385)||(16715636-16715768)
[»] chr1 (3 HSPs)
chr1 (130-270)||(26324320-26324466)
chr1 (255-293)||(5130082-5130120)
chr1 (101-141)||(26325040-26325080)
[»] scaffold0627 (1 HSPs)
scaffold0627 (255-329)||(3775-3849)


Alignment Details
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 47 - 460
Target Start/End: Complemental strand, 1601324 - 1600915
Alignment:
Q  47 caaaaatcgcaactagccaaatcataacttgtgatttaacataaccctgcctagtgtatggaaattccttcttatcagctgtactcttcaccaaattctt 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1601324 caaaaatcgcaactagccaaatcataacttgtgatttaacataaccctgcctagtgtatggaaattccttcttatcagctgtactcttcaccaaattctt 1601225  T
Q  147 caccatcagacgaggatgaagataaatttttcaagtcaccaaaagatgatggaaaacatgtagtttctaagtcttaaacagtcagttgagacagagatag 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1601224 caccatcagacgaggatgaagataaatttttcaagtcaccaaaagatgatggaaaacatgtagtttctaagtcttaaacagtcagttgagacagagatag 1601125  T
Q  247 accttccgtttcttcccgcaatttaaactttgcacacctatataaattaaaacaatatttgggaataatggttaagtaatattagctaaaacttcaaatt 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1601124 accttccgtttcttcccgcaatttaaactttgcacacctatataaattaaaacaatatttgggaataatggttaagtaatattagctaaaactgcaaatt 1601025  T
Q  347 gcaggggatggaatacacttaagaaacaatttactacttagcaactaagaacgttcaaataactgacattacaacaactgtccattcattttctcctcct 446  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||    
T  1601024 gcaggggatggaatacacttaagaaacaatttactacttagcaactaagaacgttcaaataactgacattacaacaactgtc----cattttctcctcct 1600929  T
Q  447 ccatcaacacgaaa 460  Q
    ||||||||||||||    
T  1600928 ccatcaacacgaaa 1600915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 130 - 460
Target Start/End: Original strand, 8528025 - 8528355
Alignment:
Q  130 ctcttcaccaaattcttcaccatcagacgaggatgaagataaatttttcaagtcaccaaaagatgatggaaaacatgtagtttctaagtcttaaacagtc 229  Q
    |||||| ||||| ||||||||||||||  |||| ||||||| |||| ||||||||| | ||||||||| ||| |||| | |||| |||||| ||||| ||    
T  8528025 ctcttcgccaaactcttcaccatcagataaggaggaagatatatttatcaagtcactataagatgatgaaaagcatgaactttc-aagtctcaaacaatc 8528123  T
Q  230 agttgagacagagatagaccttccgtttcttcccgcaatttaaactttgcacacctatataaattaaaacaatatttgggaataatggttaagtaatatt 329  Q
     ||||||||||||| ||| | ||| ||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||| |    
T  8528124 tgttgagacagagaaagaacctccttttctccccgcaatttaaactttgcacacctatagaaattaaaacaatattggggaatattggttaagtaatagt 8528223  T
Q  330 agctaaaacttcaaattgcaggggatggaatacacttaagaaacaatttactacttagcaact-aagaacgttcaaataactgacattacaacaactgtc 428  Q
    |||||||||| ||||||||||||||||||  |  || ||||||| ||||||||| |||||||| |||||  | |||||||| |||| |||||||||||||    
T  8528224 agctaaaactgcaaattgcaggggatggatcagcctcaagaaactatttactacctagcaactaaagaagatccaaataaccgacaatacaacaactgtc 8528323  T
Q  429 cattcattttctcctcctccatcaacacgaaa 460  Q
    |||||||||||| | |||||||||||||||||    
T  8528324 cattcattttctacacctccatcaacacgaaa 8528355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 142 - 460
Target Start/End: Original strand, 8534601 - 8534920
Alignment:
Q  142 ttcttcaccatcagacgaggatgaagataaatttttcaagtcaccaaaagatgatggaaaacatgtagtttctaagtcttaaacagtcagttgaga---c 238  Q
    |||||||||||||||  |||| | ||||| |||| ||||||||||| ||||||||| |||||||| | ||   |||||| ||||| || |||||||   |    
T  8534601 ttcttcaccatcagataaggaggcagatatatttatcaagtcaccataagatgatgaaaaacatgaacttc--aagtctcaaacaatc-gttgagatcgc 8534697  T
Q  239 agagatagaccttccgtttcttcccgcaatttaaactttgcacacctatataaattaaaacaatatttgggaataatggttaagtaatattagctaaaac 338  Q
    | ||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||    
T  8534698 aaagaaagaacttccttttcttcccgcaatttaaactttgcacacctatataaattaaaacaatattggggaatattggttaagtaatagtagctaaaac 8534797  T
Q  339 ttcaaattgcaggggatggaatacacttaagaaacaatttactacttagcaact-aagaacgttcaaataactgacattacaacaactgtccattcattt 437  Q
    | |||||| |||||||||||  |  || ||||||| ||||||||| |||||||| |||||  | ||||||||||| ||||||||||||||||||||||||    
T  8534798 tgcaaattacaggggatggatcagcctcaagaaactatttactacctagcaactaaagaagatccaaataactgagattacaacaactgtccattcattt 8534897  T
Q  438 tctcctcctccatcaacacgaaa 460  Q
    ||| ||||||| |||||||||||    
T  8534898 tcttctcctccgtcaacacgaaa 8534920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 49 - 141
Target Start/End: Original strand, 8527735 - 8527827
Alignment:
Q  49 aaaatcgcaactagccaaatcataacttgtgatttaacataaccctgcctagtgtatggaaattccttcttatcagctgtactcttcaccaaa 141  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8527735 aaaatcacaactagccaaatcataacttgtgatttaacataaccctgcctagtgtatggaaattccttcttatcagctgtactcttcaccaaa 8527827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 255 - 432
Target Start/End: Original strand, 8640694 - 8640871
Alignment:
Q  255 tttcttcccgcaatttaaactttgcacacctatataaattaaaacaatatttgggaataatggttaagtaatattagctaaaacttcaaattgcagggga 354  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||  ||||||||| |||    
T  8640694 tttcttctcccaatttaaactttgcacacctatataaattaaaacaatattagggaacaatggttaagtaatattagctaaaactgaaaattgcagagga 8640793  T
Q  355 tggaatacacttaagaaacaatttactacttagcaac-taagaacgttcaaataactgacattacaacaactgtccatt 432  Q
    |||||||  ||| | |||| |||||||||||| |||| |||| |  | || | |||||| |||||||||||| ||||||    
T  8640794 tggaatagtcttgaaaaac-atttactacttaacaacttaagcagatccataaaactgaaattacaacaactatccatt 8640871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 255 - 343
Target Start/End: Original strand, 9002563 - 9002651
Alignment:
Q  255 tttcttcccgcaatttaaactttgcacacctatataaattaaaacaatatttgggaataatggttaagtaatattagctaaaacttcaa 343  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||||||  |||| || |||||| |||||||||||||||||||||    
T  9002563 tttcttccctcaatttaaactttgcacacctatataaattacaacaatattcaggaacaacggttaaataatattagctaaaacttcaa 9002651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 172 - 339
Target Start/End: Complemental strand, 9075281 - 9075116
Alignment:
Q  172 atttttcaagtcaccaaaagatgatggaaaacatgtagtttctaagtcttaaacagtcagttgagacagagatagaccttccgtttcttcccgcaattta 271  Q
    |||| ||||||||||  ||||||||| ||||||| || |||  |||||| ||||| ||  |||| ||||||| ||| | ||| |||||||||||||||||    
T  9075281 atttatcaagtcaccgtaagatgatgaaaaacatatacttt--aagtctcaaacaatctcttgaaacagagaaagaacgtccctttcttcccgcaattta 9075184  T
Q  272 aactttgcacacctatataaattaaaacaatatttgggaataatggttaagtaatattagctaaaact 339  Q
    |||||||||||||||||  ||| ||| |  |||| | |||||||||| ||||||||||||||||||||    
T  9075183 aactttgcacacctataataatcaaaccggtattagagaataatggtcaagtaatattagctaaaact 9075116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 56 - 126
Target Start/End: Original strand, 15618506 - 15618576
Alignment:
Q  56 caactagccaaatcataacttgtgatttaacataaccctgcctagtgtatggaaattccttcttatcagct 126  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||| ||||||| ||||    
T  15618506 caactagccaaatgataacttgtgatttaacataaccctgtctagtgtatgtaaattctttcttattagct 15618576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 255 - 305
Target Start/End: Complemental strand, 8548835 - 8548785
Alignment:
Q  255 tttcttcccgcaatttaaactttgcacacctatataaattaaaacaatatt 305  Q
    |||||||| | |||||||||||| |||||||||||||||||||||||||||    
T  8548835 tttcttcctgaaatttaaactttacacacctatataaattaaaacaatatt 8548785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 315
Target Start/End: Original strand, 8677560 - 8677620
Alignment:
Q  255 tttcttcccgcaatttaaactttgcacacctatataaattaaaacaatatttgggaataat 315  Q
    ||||||||||||||| ||  ||||||||||||||| ||||||||||||||| | |||||||    
T  8677560 tttcttcccgcaattcaacatttgcacacctatatcaattaaaacaatattagcgaataat 8677620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 305
Target Start/End: Complemental strand, 8550906 - 8550856
Alignment:
Q  255 tttcttcccgcaatttaaactttgcacacctatataaattaaaacaatatt 305  Q
    |||||||| |||||||| |||||||||||||| |||||||| |||||||||    
T  8550906 tttcttcctgcaatttatactttgcacacctaaataaattataacaatatt 8550856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 141
Target Start/End: Original strand, 8534346 - 8534399
Alignment:
Q  87 ataaccctgcctagtgtatggaaattccttcttatcagctgtactcttcaccaaa 141  Q
    ||||||||||||| ||| || ||||||||||| ||||| ||||||||||||||||    
T  8534346 ataaccctgcctactgtttg-aaattccttctaatcagttgtactcttcaccaaa 8534399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 315
Target Start/End: Original strand, 8636303 - 8636396
Alignment:
Q  222 aaacagtcagttgagacagagatagaccttccgtttcttcccgcaatttaaactttgcacacctatataaattaaaacaatatttgggaataat 315  Q
    |||||||  |||||||||  || ||| ||||  |||||||| |||||| ||  ||||||||||||||| ||| ||||||||||  |||||||||    
T  8636303 aaacagtttgttgagacaaggaaagaacttcattttcttccggcaattcaacatttgcacacctatatcaatcaaaacaatatgagggaataat 8636396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 8640467 - 8640504
Alignment:
Q  255 tttcttcccgcaatttaaactttgcacacctatataaa 292  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  8640467 tttcttcacgcaatttaaattttgcacacctatataaa 8640504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 288
Target Start/End: Original strand, 9002300 - 9002333
Alignment:
Q  255 tttcttcccgcaatttaaactttgcacacctata 288  Q
    ||||||| ||||||||||||||||||||||||||    
T  9002300 tttcttcacgcaatttaaactttgcacacctata 9002333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 315
Target Start/End: Original strand, 8643817 - 8643857
Alignment:
Q  275 tttgcacacctatataaattaaaacaatatttgggaataat 315  Q
    ||||||||||||||| |||||||||||||||  ||||||||    
T  8643817 tttgcacacctatatcaattaaaacaatattaaggaataat 8643857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 166; Significance: 1e-88; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 195 - 460
Target Start/End: Complemental strand, 48362638 - 48362374
Alignment:
Q  195 atggaaaacatgtagtttctaagtcttaaacagtcagttgagacagagatagaccttccgtttcttcccgcaatttaaactttgcacacctatataaatt 294  Q
    |||||||||||||||||||||||||| ||||| || ||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||    
T  48362638 atggaaaacatgtagtttctaagtctcaaacaatctgttgagacagagatataccttccttttcttcctgcaatttaaactttgcacacctatataaatt 48362539  T
Q  295 aaaacaatatttgggaataatggttaagtaatattagctaaaacttcaaattgcaggggatggaatacacttaagaaacaatttactacttagcaactaa 394  Q
    ||| |||||||  |||||||||||||||||||||||||||||||| |||||||||| ||||||||||  ||  | |||| |||||||| ||| |||||||    
T  48362538 aaaccaatattcaggaataatggttaagtaatattagctaaaactgcaaattgcagaggatggaatagtctcga-aaactatttactaattaccaactaa 48362440  T
Q  395 gaacgttcaaataactgacattacaacaactgtccattcattttctcctcctccatcaacacgaaa 460  Q
    ||| || ||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||    
T  48362439 gaaggtccaaataactgacattacaacaacttcccattcattttctcgtcctccatcaacacgaaa 48362374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 47 - 141
Target Start/End: Complemental strand, 48362961 - 48362867
Alignment:
Q  47 caaaaatcgcaactagccaaatcataacttgtgatttaacataaccctgcctagtgtatggaaattccttcttatcagctgtactcttcaccaaa 141  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||    
T  48362961 caaaaatcacaactagccaaatcataacttgtgatttaacataaccctgcccagtgtatggaaattccctcttatcagttgtactcttcaccaaa 48362867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 35777552 - 35777608
Alignment:
Q  255 tttcttcccgcaatttaaactttgcacacctatataaattaaaacaatatttgggaa 311  Q
    ||||||||| ||||||| |||||||||||||||||| || | ||||||||| |||||    
T  35777552 tttcttcccacaatttatactttgcacacctatatacatgacaacaatattagggaa 35777608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 141
Target Start/End: Original strand, 35777257 - 35777332
Alignment:
Q  66 aatcataacttgtgatttaacataaccctgcctagtgtatggaaattccttcttatcagctgtactcttcaccaaa 141  Q
    |||||||| |||||||||| |||| || |||||| |||||||||||| |||| ||  || |||||||||| |||||    
T  35777257 aatcataaattgtgatttagcatagccatgcctactgtatggaaattacttcataatagttgtactcttcgccaaa 35777332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 133; Significance: 6e-69; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 130 - 460
Target Start/End: Original strand, 9442192 - 9442516
Alignment:
Q  130 ctcttcaccaaattcttcaccatcagacgaggatgaagataaatttttcaagtcaccaaaagatgatggaaaacatgtagtttctaagtcttaaacagtc 229  Q
    |||||||||||| ||||||||||||||  |||| ||||||| |||| ||||||||| | ||||||||| ||| |||| | |||| || ||| ||||        
T  9442192 ctcttcaccaaactcttcaccatcagataaggaggaagatatatttatcaagtcactataagatgatgaaaagcatgaactttcaaa-tctcaaac---- 9442286  T
Q  230 agttgagacagagatagaccttccgtttcttcccgcaatttaaactttgcacacctatataaattaaaacaatatttgggaataatggttaagtaatatt 329  Q
      |||||||||||| ||| | ||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||  |||||| ||||||| ||||| |    
T  9442287 --ttgagacagagaaagaacctccttttctccccgcaatttaaactttgcacacctatagaaattaaaacaatattgaggaatattggttaattaatagt 9442384  T
Q  330 agctaaaacttcaaattgcaggggatggaatacacttaagaaacaatttactacttagcaact-aagaacgttcaaataactgacattacaacaactgtc 428  Q
    |||||||||| ||||||||||||||||||  |  || ||||||| ||||||||| |||||||| |||||  | |||||||| |||| |||||||||||||    
T  9442385 agctaaaactgcaaattgcaggggatggatcagcctcaagaaactatttactacatagcaactaaagaagatccaaataaccgacaatacaacaactgtc 9442484  T
Q  429 cattcattttctcctcctccatcaacacgaaa 460  Q
    |||||||||||| | |||||||||||||||||    
T  9442485 cattcattttctacgcctccatcaacacgaaa 9442516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 84 - 141
Target Start/End: Original strand, 9441937 - 9441994
Alignment:
Q  84 aacataaccctgcctagtgtatggaaattccttcttatcagctgtactcttcaccaaa 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9441937 aacataaccctgcctagtgtatggaaattccttcttatcagctgtactcttcaccaaa 9441994  T

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Target: chr6 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 255 - 385
Target Start/End: Original strand, 16715636 - 16715768
Alignment:
Q  255 tttcttcccgcaatttaaactttgcacacctatataaattaaaacaatatttgggaataatggttaagtaatattagctaaaacttcaaattgca--ggg 352  Q
    ||||||||||||||||||||||| |||||||||||| |  ||||||||||| |||||  |||  ||||||||||||||||||| | ||| ||| |  |||    
T  16715636 tttcttcccgcaatttaaactttccacacctatatagaagaaaacaatattagggaacgatgactaagtaatattagctaaaattgcaatttgtaggggg 16715735  T
Q  353 gatggaatacacttaagaaacaatttactactt 385  Q
    | |||||||  || |||||||||||||||||||    
T  16715736 ggtggaataagctcaagaaacaatttactactt 16715768  T

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Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 130 - 270
Target Start/End: Complemental strand, 26324466 - 26324320
Alignment:
Q  130 ctcttcaccaaattcttcaccatcagacgaggatgaagataaatttttcaagtcaccaaaagatgatggaaaacatgtagtttctaagtcttaaacagtc 229  Q
    |||||||||||| ||||||||||||||  |||| ||||||| |||| ||||||||||| ||||||||| ||| |||| | |||| |||||| ||| | ||    
T  26324466 ctcttcaccaaactcttcaccatcagataaggaggaagatatatttatcaagtcaccataagatgatgaaaagcatgaactttc-aagtctcaaaaaatc 26324368  T
Q  230 -------agttgagacagagatagaccttccgtttcttcccgcaattt 270  Q
           |||||||||||||| ||| ||||| ||||||||||||||||    
T  26324367 tgttgagagttgagacagagaaagaacttccttttcttcccgcaattt 26324320  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 293
Target Start/End: Original strand, 5130082 - 5130120
Alignment:
Q  255 tttcttcccgcaatttaaactttgcacacctatataaat 293  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  5130082 tttcttcccgcaatttaaactttgcacacctgtataaat 5130120  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 26325080 - 26325040
Alignment:
Q  101 tgtatggaaattccttcttatcagctgtactcttcaccaaa 141  Q
    |||||||||||||||||| ||||| ||||||||||||||||    
T  26325080 tgtatggaaattccttctaatcagttgtactcttcaccaaa 26325040  T

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Target: scaffold0627 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 329
Target Start/End: Original strand, 3775 - 3849
Alignment:
Q  255 tttcttcccgcaatttaaactttgcacacctatataaattaaaacaatatttgggaataatggttaagtaatatt 329  Q
    ||||||| ||||||||||||||| |||||||||||||   |||||| |||| |||||  |||  |||||||||||    
T  3775 tttcttcacgcaatttaaactttccacacctatataatagaaaacagtattagggaacgatgactaagtaatatt 3849  T

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