View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9962_high_1 (Length: 409)

Name: NF9962_high_1
Description: NF9962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9962_high_1
NF9962_high_1
[»] chr6 (5 HSPs)
chr6 (19-404)||(14585785-14586175)
chr6 (19-327)||(14610744-14611053)
chr6 (338-404)||(14620640-14620706)
chr6 (307-399)||(31706348-31706440)
chr6 (307-389)||(22532104-22532186)
[»] scaffold0048 (1 HSPs)
scaffold0048 (307-381)||(64220-64294)
[»] chr4 (6 HSPs)
chr4 (309-398)||(55261568-55261657)
chr4 (337-397)||(9690001-9690061)
chr4 (306-389)||(32348778-32348861)
chr4 (337-387)||(53569598-53569648)
chr4 (307-389)||(56337969-56338051)
chr4 (304-361)||(34317976-34318033)
[»] chr7 (2 HSPs)
chr7 (308-389)||(30802246-30802327)
chr7 (338-389)||(27724606-27724657)
[»] chr5 (3 HSPs)
chr5 (306-365)||(24177224-24177283)
chr5 (304-386)||(13735356-13735438)
chr5 (306-387)||(5909533-5909614)
[»] chr3 (4 HSPs)
chr3 (307-381)||(15792758-15792832)
chr3 (337-398)||(4963942-4964003)
chr3 (305-378)||(5789950-5790023)
chr3 (305-402)||(34828993-34829090)
[»] chr2 (3 HSPs)
chr2 (309-387)||(31265814-31265892)
chr2 (305-371)||(44941283-44941349)
chr2 (337-398)||(6822992-6823053)
[»] chr1 (1 HSPs)
chr1 (338-402)||(52028258-52028322)


Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 404
Target Start/End: Original strand, 14585785 - 14586175
Alignment:
Q  19 acataggattcaaagtcatgatggttgagcacacgaggaaggtttcaacatcaatttctaaaaaccatttattttttggttagatcttatggaattcaaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14585785 acataggattcaaagtcatgatggttgagcacacgaggaaggtttcaacatcaatttctaaaaaccatttattttttggttagatcttatggatttcaaa 14585884  T
Q  119 gaagggannnnnnnnnnc----aaattcattacattatggaatggttaccacaaaaat--ttcattgtaaaaaatctatctttaaaattattagagtctg 212  Q
    |||||||          |    |||||||||||||||||||||| ||||||||||||   || ||||||||||||||||||||||||||||||||||||     
T  14585885 gaagggattttttttttctttcaaattcattacattatggaatgattaccacaaaaaaaatttattgtaaaaaatctatctttaaaattattagagtcta 14585984  T
Q  213 ataatgaaaatgattgcgagattgtggtaacttgtgttgctttttctacccaacatggtgttaaatatttggtgatagatttttatgatcactttggtgg 312  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||    
T  14585985 ataatgaaaatgattgcgagattgtggtaacttgtgatgctttttctacccaacacg-tgttaaatatttggtgatagatttttatgatcgctttggtgg 14586083  T
Q  313 ctgaaagctaataatgccacatcagtgtatggttcttagagatggtggttggatcctttactttgtttgtgtatcgatcgacctttgcttct 404  Q
    |||||| |||||||||||||||  ||||||||| ||||||||||||||| ||||||||| ||||||||| |||| ||| |||||||| ||||    
T  14586084 ctgaaaactaataatgccacatttgtgtatggtgcttagagatggtggtcggatcctttgctttgtttgcgtattgattgacctttgtttct 14586175  T

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Target: chr6; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 327
Target Start/End: Original strand, 14610744 - 14611053
Alignment:
Q  19 acataggattcaaagtcatgatggttgagcacacgaggaaggtttcaacatcaatttctaaaaaccatttattttttggttagatcttatggaattcaaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14610744 acataggattcaaagtcatgatggttgagcacacgaggaaggtttcaacatcaatttctaaaaaccatttattttttggttagatcttatggatttcaaa 14610843  T
Q  119 gaagggannnnnnnnnncaaattcattacattatggaatggttaccacaaaaat---ttcattgtaaaaaatctatctttaaaattattagagtctgata 215  Q
    |||||||          ||||||||||||||||||||||||||||||||||||    |||||||||||| |||||||||||||||||||||  ||||| |    
T  14610844 gaagggattttttttttcaaattcattacattatggaatggttaccacaaaaaaaaattcattgtaaaagatctatctttaaaattattag--tctgaaa 14610941  T
Q  216 atgaaaatgattgcgagattgtggtaacttgtgttgctttttctacccaacatggtgttaaatatttggtgatagatttttatgatcactttggtggctg 315  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||| |||||||    
T  14610942 atgaatatgattacgagattgtggtaacttgtgttgctttttctacccaacacggtgttaaatatttggtgatagattttaatgatcgctttagtggctg 14611041  T
Q  316 aaagctaataat 327  Q
    ||||||||||||    
T  14611042 aaagctaataat 14611053  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 338 - 404
Target Start/End: Original strand, 14620640 - 14620706
Alignment:
Q  338 tgtatggttcttagagatggtggttggatcctttactttgtttgtgtatcgatcgacctttgcttct 404  Q
    |||||||||||||||||||||||| ||||||||| ||||||||| ||||| ||||||||||| ||||    
T  14620640 tgtatggttcttagagatggtggtcggatcctttgctttgtttgcgtatcaatcgacctttgtttct 14620706  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 399
Target Start/End: Complemental strand, 31706440 - 31706348
Alignment:
Q  307 tggtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggttggatcctttactttgtttgtgtatcgatcgacctttg 399  Q
    |||||||| ||||||||||||||||| |  ||||  || ||| |||||||||||| ||| | |||| |||||||| |||||||  ||||||||    
T  31706440 tggtggctaaaagctaataatgccacgtttgtgtgcggctctcagagatggtggtcggaccttttaatttgtttgagtatcgactgacctttg 31706348  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 389
Target Start/End: Complemental strand, 22532186 - 22532104
Alignment:
Q  307 tggtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggttggatcctttactttgtttgtgtatcga 389  Q
    |||||||| ||||||| ||| |||||||  ||||| |||||| | || ||||||||||||||| | ||||||||  |||||||    
T  22532186 tggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggttggatcctatgctttgtttaggtatcga 22532104  T

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Target: scaffold0048 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 381
Target Start/End: Original strand, 64220 - 64294
Alignment:
Q  307 tggtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggttggatcctttactttgtttg 381  Q
    |||||||| || || |||||||||||||  ||||| |||||| ||||||| |||| |||||||||||||||||||    
T  64220 tggtggcttaaggcaaataatgccacatttgtgtacggttctcagagatgatggtcggatcctttactttgtttg 64294  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 309 - 398
Target Start/End: Complemental strand, 55261657 - 55261568
Alignment:
Q  309 gtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggttggatcctttactttgtttgtgtatcgatcgaccttt 398  Q
    ||||||||||||||| || ||||| |  |||||||||||| |||||||||||||||| || ||||||||  || |||||||  |||||||    
T  55261657 gtggctgaaagctaacaaagccacttttgtgtatggttctcagagatggtggttggacccgttactttgactgggtatcgactgaccttt 55261568  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 397
Target Start/End: Complemental strand, 9690061 - 9690001
Alignment:
Q  337 gtgtatggttcttagagatggtggttggatcctttactttgtttgtgtatcgatcgacctt 397  Q
    |||||||||||| | |||||||||| | | ||||||||||||||| ||||||| |||||||    
T  9690061 gtgtatggttctcaaagatggtggtcgaaccctttactttgtttgggtatcgaccgacctt 9690001  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 306 - 389
Target Start/End: Original strand, 32348778 - 32348861
Alignment:
Q  306 ttggtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggttggatcctttactttgtttgtgtatcga 389  Q
    |||||||||||||||||| |  ||||  |  ||||| |||||| |||||||||||| |||||||||  |||||||| |||||||    
T  32348778 ttggtggctgaaagctaagaccgccatgtttgtgtacggttctcagagatggtggtcggatcctttgatttgtttgggtatcga 32348861  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 387
Target Start/End: Complemental strand, 53569648 - 53569598
Alignment:
Q  337 gtgtatggttcttagagatggtggttggatcctttactttgtttgtgtatc 387  Q
    ||||| |||||| |||||||||||| ||| ||||||||||||||| |||||    
T  53569648 gtgtacggttctcagagatggtggtcggaccctttactttgtttgggtatc 53569598  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 389
Target Start/End: Original strand, 56337969 - 56338051
Alignment:
Q  307 tggtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggttggatcctttactttgtttgtgtatcga 389  Q
    |||||||| |||||||| |||||||| |  || ||||||||| | |||||||||||||| |  || ||||||||| |||||||    
T  56337969 tggtggctaaaagctaacaatgccacttttgtttatggttctcaaagatggtggttggaccggttgctttgtttgggtatcga 56338051  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 361
Target Start/End: Complemental strand, 34318033 - 34317976
Alignment:
Q  304 ctttggtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggt 361  Q
    |||||||||||||| ||||||||||||||||   |||| |||||| | ||||||||||    
T  34318033 ctttggtggctgaaggctaataatgccacattcatgtacggttctcatagatggtggt 34317976  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 308 - 389
Target Start/End: Original strand, 30802246 - 30802327
Alignment:
Q  308 ggtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggttggatcctttactttgtttgtgtatcga 389  Q
    ||||||||||||||||||| ||||| |  ||||| |||||| ||||| |||||| ||| |||||  |||||||| |||||||    
T  30802246 ggtggctgaaagctaataacgccacgtttgtgtacggttctcagagacggtggtcggaccctttgatttgtttgggtatcga 30802327  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 338 - 389
Target Start/End: Original strand, 27724606 - 27724657
Alignment:
Q  338 tgtatggttcttagagatggtggttggatcctttactttgtttgtgtatcga 389  Q
    |||| |||||| | |||||||||| ||||||||||||||||||| |||||||    
T  27724606 tgtacggttctcaaagatggtggtcggatcctttactttgtttgggtatcga 27724657  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 306 - 365
Target Start/End: Complemental strand, 24177283 - 24177224
Alignment:
Q  306 ttggtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggttgga 365  Q
    |||||||||||||||||| || ||||| |   ||||||||||| ||||||||||||||||    
T  24177283 ttggtggctgaaagctaacaaagccacttttatgtatggttctcagagatggtggttgga 24177224  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 386
Target Start/End: Original strand, 13735356 - 13735438
Alignment:
Q  304 ctttggtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggttggatcctttactttgtttgtgtat 386  Q
    ||||||||| | |||||||||||| |||| |  ||||| || |||||||||||||||| | | |||||||| |||||| ||||    
T  13735356 ctttggtggttaaaagctaataataccacttttgtgtacggctcttagagatggtggtcgaaccctttactgtgtttgggtat 13735438  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 387
Target Start/End: Original strand, 5909533 - 5909614
Alignment:
Q  306 ttggtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggttggatcctttactttgtttgtgtatc 387  Q
    ||||||||||||||| ||||| ||||| |  ||||| | |||| |||||||||||| ||| |||||  |||||||| |||||    
T  5909533 ttggtggctgaaagcaaataacgccacttttgtgtacgattctcagagatggtggtcggaccctttgatttgtttgggtatc 5909614  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 381
Target Start/End: Complemental strand, 15792832 - 15792758
Alignment:
Q  307 tggtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggttggatcctttactttgtttg 381  Q
    |||||||| || ||||||||||| || |  ||||| |||||| |||||||||||||||| || ||| ||||||||    
T  15792832 tggtggcttaaggctaataatgctacttttgtgtacggttctcagagatggtggttggaccccttagtttgtttg 15792758  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 398
Target Start/End: Complemental strand, 4964003 - 4963942
Alignment:
Q  337 gtgtatggttcttagagatggtggttggatcctttactttgtttgtgtatcgatcgaccttt 398  Q
    ||||| |||||| |||||||||||| ||| |||||||||||| || |||||||  |||||||    
T  4964003 gtgtacggttctcagagatggtggtcggaccctttactttgtctgggtatcgactgaccttt 4963942  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 378
Target Start/End: Original strand, 5789950 - 5790023
Alignment:
Q  305 tttggtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggttggatcctttactttgt 378  Q
    |||||||| | |||||||||||  |||| |  ||||| || ||| |||||||||||||||| ||||||||||||    
T  5789950 tttggtggttaaaagctaataacaccacttttgtgtacggctctgagagatggtggttggaccctttactttgt 5790023  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 402
Target Start/End: Complemental strand, 34829090 - 34828993
Alignment:
Q  305 tttggtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggttggatcctttactttgtttgtgtatcgatcgacctttgctt 402  Q
    |||||||||| ||||||||||| ||||| |   |||| | |||| | |||||||||| | | |||||| | |||||| |||||||| |||||||||||    
T  34829090 tttggtggcttaaagctaataaggccacttttatgtacgattctcaaagatggtggtcgaaccctttattatgtttgagtatcgattgacctttgctt 34828993  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 387
Target Start/End: Complemental strand, 31265892 - 31265814
Alignment:
Q  309 gtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggttggatcctttactttgtttgtgtatc 387  Q
    |||||| |||||| ||||| |||| |  ||||||| |||| | |||||||||| ||| ||||||||||||||| |||||    
T  31265892 gtggctaaaagctcataataccacttttgtgtatgattctcaaagatggtggtcggaccctttactttgtttgggtatc 31265814  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 371
Target Start/End: Original strand, 44941283 - 44941349
Alignment:
Q  305 tttggtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggttggatccttt 371  Q
    |||||||||| |||||||| |||| |||||  ||||| |||||  |||||||||||| |||||||||    
T  44941283 tttggtggctaaaagctaacaatgtcacatttgtgtacggttcacagagatggtggtcggatccttt 44941349  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 398
Target Start/End: Complemental strand, 6823053 - 6822992
Alignment:
Q  337 gtgtatggttcttagagatggtggttggatcctttactttgtttgtgtatcgatcgaccttt 398  Q
    ||||| |||||| | |||||||||| | | ||||||||||||||| |||||||| |||||||    
T  6823053 gtgtacggttctcaaagatggtggtcgaaccctttactttgtttgggtatcgattgaccttt 6822992  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 402
Target Start/End: Complemental strand, 52028322 - 52028258
Alignment:
Q  338 tgtatggttcttagagatggtggttggatcctttactttgtttgtgtatcgatcgacctttgctt 402  Q
    |||||||| || | |||||||||| ||| |||||| |||||||| || | |||||||||||||||    
T  52028322 tgtatggtactcaaagatggtggtcggaccctttattttgtttgggtttagatcgacctttgctt 52028258  T

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