View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9962_low_1 (Length: 658)

Name: NF9962_low_1
Description: NF9962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9962_low_1
NF9962_low_1
[»] chr5 (2 HSPs)
chr5 (122-507)||(1160228-1160615)
chr5 (22-99)||(39971014-39971091)
[»] chr1 (4 HSPs)
chr1 (471-628)||(21977354-21977511)
chr1 (110-274)||(21971882-21972046)
chr1 (346-457)||(38548011-38548122)
chr1 (22-97)||(32153756-32153831)
[»] chr3 (15 HSPs)
chr3 (21-99)||(48921668-48921746)
chr3 (22-99)||(16869537-16869615)
chr3 (22-99)||(1330967-1331043)
chr3 (404-508)||(52612894-52612998)
chr3 (409-507)||(42773829-42773927)
chr3 (346-457)||(55167506-55167617)
chr3 (65-99)||(29383057-29383091)
chr3 (411-457)||(31524761-31524807)
chr3 (65-99)||(35938408-35938442)
chr3 (21-91)||(42044220-42044290)
chr3 (404-460)||(1547671-1547727)
chr3 (421-457)||(10537814-10537850)
chr3 (21-97)||(15996735-15996811)
chr3 (22-97)||(30819878-30819953)
chr3 (22-58)||(38670793-38670829)
[»] chr2 (5 HSPs)
chr2 (404-461)||(4636875-4636932)
chr2 (22-97)||(9701070-9701145)
chr2 (426-456)||(14849234-14849264)
chr2 (415-509)||(38784853-38784947)
chr2 (22-97)||(7116261-7116336)
[»] chr4 (8 HSPs)
chr4 (21-99)||(15496130-15496208)
chr4 (22-99)||(17781384-17781462)
chr4 (22-99)||(52575621-52575696)
chr4 (22-97)||(18872717-18872792)
chr4 (22-99)||(19839911-19839990)
chr4 (19-58)||(24177417-24177456)
chr4 (22-99)||(17261344-17261422)
chr4 (22-99)||(24178019-24178095)
[»] chr6 (6 HSPs)
chr6 (1-99)||(180542-180646)
chr6 (156-270)||(14459129-14459243)
chr6 (404-454)||(14459380-14459430)
chr6 (180-261)||(20794130-20794211)
chr6 (21-99)||(4746088-4746169)
chr6 (346-456)||(33113403-33113513)
[»] chr7 (5 HSPs)
chr7 (182-255)||(39844725-39844798)
chr7 (153-261)||(22196758-22196866)
chr7 (153-261)||(22240955-22241063)
chr7 (32-99)||(24282038-24282108)
chr7 (404-554)||(39844947-39845097)
[»] scaffold0272 (1 HSPs)
scaffold0272 (426-460)||(2422-2456)


Alignment Details
Target: chr5 (Bit Score: 93; Significance: 6e-45; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 122 - 507
Target Start/End: Original strand, 1160228 - 1160615
Alignment:
Q  122 ttggaaaggagggaggttttggaggttaatcgtccggaaggggagcggagggtgttccgacaaatttggaaaacgggggcaccttcaaaggtcatggctt 221  Q
    |||||| |||| ||||||||||| ||||  ||||||| ||||||| |||||||||| || ||||||||||| || ||||| ||||| ||||| |  ||||    
T  1160228 ttggaagggagagaggttttggaagttacccgtccggtaggggagaggagggtgtttcgccaaatttggaagaccggggctccttccaaggtgagtgctt 1160327  T
Q  222 ttgtttggaagactcttttagatcgaattccgacgcgtgtcaacttggaaaagcataattgtttatcaattgacatcgataataattgtgt--ggtgtgg 319  Q
    ||||||||||| ||||  | ||| |||| ||  ||||||| || |||||||| |  ||||||||| | | |||  | | ||||||||||||  |||||||    
T  1160328 ttgtttggaaggctctccttgattgaatcccttcgcgtgttaatttggaaaaacggaattgtttacctaatgatgttggtaataattgtgtttggtgtgg 1160427  T
Q  320 ggtgatggccgtacattcattgcatcttttcctccattgcgaattggcatggaatgtttgggggaattgaatgaaatggcttgttttgtattttgttatg 419  Q
    || | |||| | |  ||| ||||| || ||||| ||||  || || ||| |||||||||||  |||||  ||||  ||||||  |||| | ||||| |||    
T  1160428 ggagttggctgaatcttctttgcacctcttccttcattttgactttgcaaggaatgtttggttgaatttgatgatgtggcttaatttgaactttgtaatg 1160527  T
Q  420 ccgcctaatttgtttattcattgggagtgttggagtggggggataataaataaaaaggtccggaaaggtttgcgtatgatttgggagg 507  Q
    ||||| |||||||||||||||||||| |||||||| |||||||   | ||||||||||| ||||||||||||||| ||||||||||||    
T  1160528 ccgccaaatttgtttattcattgggaatgttggagcggggggaatttgaataaaaaggtgcggaaaggtttgcgtttgatttgggagg 1160615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 39971014 - 39971091
Alignment:
Q  22 tactacctccgtcctttactataggacccttttagaacaaata-tttgtctctttttataagatccttttgatattttc 99  Q
    |||||||||||||| | | |||| ||| ||||| ||| ||||| |||||| ||||||||||||||| ||||||||||||    
T  39971014 tactacctccgtccctaattataagactctttt-gaaaaaataatttgtccctttttataagatccctttgatattttc 39971091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 9e-41; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 471 - 628
Target Start/End: Original strand, 21977354 - 21977511
Alignment:
Q  471 aaaaaggtccggaaaggtttgcgtatgatttgggaggttgccatttgaatgatttggaaagtgaggaatgagcgcatctttaatggtgtcattgttgcgt 570  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||| ||||| ||||||  ||| || ||   ||    
T  21977354 aaaaaggtccggaaaggtttgcgtatgatttgggaggttgccatatgggtgatttggaaagtgaggaatgaacgcatttttaataatgtgatagtaatgt 21977453  T
Q  571 gggaggatattgtagaagatgtaaaggtcatgtcttggaggtggattcttggtagaac 628  Q
    ||||||| ||||| ||||| || ||||| |||||||||||||||||| ||||||||||    
T  21977454 gggaggagattgtggaagaggtgaaggtgatgtcttggaggtggattattggtagaac 21977511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 110 - 274
Target Start/End: Original strand, 21971882 - 21972046
Alignment:
Q  110 ttgtatttgaagttggaaaggagggaggttttggaggttaatcgtccggaaggggagcggagggtgttccgacaaatttggaaaacgggggcaccttcaa 209  Q
    |||||||| ||||||||| |||||||| || |||||||   | | ||||| ||||| ||||||||||| ||| ||||||||||||||||||||||||| |    
T  21971882 ttgtatttaaagttggaagggagggagattctggaggtgtcttgaccggagggggaacggagggtgtttcgaaaaatttggaaaacgggggcaccttcca 21971981  T
Q  210 aggtcatggcttttgtttggaagactcttttagatcgaattccgacgcgtgtcaacttggaaaag 274  Q
    |||| ||  |||||||| ||||| |||||||||||||||| |||||  |||||||||||||||||    
T  21971982 aggtgatttcttttgttgggaaggctcttttagatcgaatcccgacatgtgtcaacttggaaaag 21972046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 457
Target Start/End: Original strand, 38548011 - 38548122
Alignment:
Q  346 ttttcctccattgcgaattggcatggaatgtttgggggaattgaatgaaatggcttgttttgtattttgttatgccgcctaatttgtttattcattggga 445  Q
    ||||||| ||||| || |||| | |||||||||||  ||| | |||| ||||||| | |||  ||||| | ||||| || ||||| ||||| ||||||||    
T  38548011 ttttccttcattgtgatttggtaaggaatgtttggatgaagttaatggaatggctagatttcaattttataatgcctccaaatttatttatccattggga 38548110  T
Q  446 gtgttggagtgg 457  Q
    ||||||||||||    
T  38548111 gtgttggagtgg 38548122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 22 - 97
Target Start/End: Complemental strand, 32153831 - 32153756
Alignment:
Q  22 tactacctccgtcctttactataggacccttttagaacaaatat-ttgtctctttttataagatccttttgatattt 97  Q
    |||||||||||||||| | |||| |||| ||||| || |||||| ||||| |||||||||||| ||||||| |||||    
T  32153831 tactacctccgtccttaattataagacctttttaaaa-aaatatgttgtccctttttataagacccttttgttattt 32153756  T

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Target: chr3 (Bit Score: 63; Significance: 5e-27; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 48921668 - 48921746
Alignment:
Q  21 gtactacctccgtcctttactataggacccttttagaacaaatatttgtctctttttataagatccttttgatattttc 99  Q
    ||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  48921668 gtactacctccgtcccttattataggacccttttagaaaaaatatttgtctctttttataagacccttttgatattttc 48921746  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 16869615 - 16869537
Alignment:
Q  22 tactacctccgtcctttactataggacccttttagaacaaatatttgtctct-ttttataagatccttttgatattttc 99  Q
    |||||||||||||| ||| |||||||||||||||||| | | |||||||||| |||||||||| |||||||||||||||    
T  16869615 tactacctccgtcccttattataggacccttttagaaaacaaatttgtctcttttttataagacccttttgatattttc 16869537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 1331043 - 1330967
Alignment:
Q  22 tactacctccgtcctttactataggacccttttagaacaaatatttgtctctttttataagatccttttgatattttc 99  Q
    |||||||||||||  ||| |||||||||||||||||| ||| ||| ||| |||||||||||| |||||||||||||||    
T  1331043 tactacctccgtctattattataggacccttttagaaaaaaaatt-gtccctttttataagacccttttgatattttc 1330967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 404 - 508
Target Start/End: Complemental strand, 52612998 - 52612894
Alignment:
Q  404 tttgtattttgttatgccgcctaatttgtttattcattgggagtgttggagtggggggataataaataaaaaggtccggaaaggtttgcgtatgatttgg 503  Q
    |||| ||||| | |||||||| |||||||| ||||||||||||||||||||||||||  | ||| |||| ||| | ||||| || ||| | |||||||||    
T  52612998 tttgaattttataatgccgccaaatttgttaattcattgggagtgttggagtgggggattgatacataagaagattcggaagggattgaggatgatttgg 52612899  T
Q  504 gaggt 508  Q
    |||||    
T  52612898 gaggt 52612894  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 409 - 507
Target Start/End: Complemental strand, 42773927 - 42773829
Alignment:
Q  409 attttgttatgccgcctaatttgtttattcattgggagtgttggagtggggggataataaataaaaaggtccggaaaggtttgcgtatgatttgggagg 507  Q
    ||||||||||||| || ||  | |||||||||||||||||||||||||||||     | || || || ||||| || ||||||||||||||||||||||    
T  42773927 attttgttatgcctccaaacctctttattcattgggagtgttggagtgggggatctcttaagaagaaagtccgtaatggtttgcgtatgatttgggagg 42773829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 457
Target Start/End: Complemental strand, 55167617 - 55167506
Alignment:
Q  346 ttttcctccattgcgaattggcatggaatgtttgggggaattgaatgaaatggcttgttttgtattttgttatgccgcctaatttgtttattcattggga 445  Q
    ||||||| ||||||||  ||| | |||||||||||  ||| | |||| ||||||| | |||  ||||| | ||||| || ||||| ||||| ||||||||    
T  55167617 ttttccttcattgcgatctggtaaggaatgtttggatgaagttaatggaatggctagatttcaattttataatgcctccaaatttatttatccattggga 55167518  T
Q  446 gtgttggagtgg 457  Q
    ||||||||||||    
T  55167517 gtgttggagtgg 55167506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 65 - 99
Target Start/End: Original strand, 29383057 - 29383091
Alignment:
Q  65 tttgtctctttttataagatccttttgatattttc 99  Q
    |||||||||||||||||||||| ||||||||||||    
T  29383057 tttgtctctttttataagatccctttgatattttc 29383091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 411 - 457
Target Start/End: Original strand, 31524761 - 31524807
Alignment:
Q  411 tttgttatgccgcctaatttgtttattcattgggagtgttggagtgg 457  Q
    ||||| ||||| || ||||||||||| ||||||||||||||||||||    
T  31524761 tttgtaatgcctccaaatttgtttatccattgggagtgttggagtgg 31524807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 65 - 99
Target Start/End: Original strand, 35938408 - 35938442
Alignment:
Q  65 tttgtctctttttataagatccttttgatattttc 99  Q
    |||||||||||||||||||| ||||||||||||||    
T  35938408 tttgtctctttttataagattcttttgatattttc 35938442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 42044290 - 42044220
Alignment:
Q  21 gtactacctccgtcctttactataggacccttttagaacaaatatttgtctctttttataagatccttttg 91  Q
    ||||||||||||||| | | |||| || ||||||| || ||  |||||||||||||||||||||| |||||    
T  42044290 gtactacctccgtccctaattataagatccttttaaaaaaataatttgtctctttttataagatctttttg 42044220  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 404 - 460
Target Start/End: Original strand, 1547671 - 1547727
Alignment:
Q  404 tttgtattttgttatgccgcctaatttgtttattcattgggagtgttggagtggggg 460  Q
    |||| ||||||| ||||| || |||||  ||||||||||||| ||||||||||||||    
T  1547671 tttgaattttgtaatgccaccgaatttaattattcattgggaatgttggagtggggg 1547727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 421 - 457
Target Start/End: Complemental strand, 10537850 - 10537814
Alignment:
Q  421 cgcctaatttgtttattcattgggagtgttggagtgg 457  Q
    |||||||||| || |||||||||||||||||||||||    
T  10537850 cgcctaattttttcattcattgggagtgttggagtgg 10537814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 15996811 - 15996735
Alignment:
Q  21 gtactacctccgtcctttactataggacccttttagaacaaatatttgtctctttttataagatccttttgatattt 97  Q
    ||||||||||||||| | | |||| |||||||||  || ||| ||||||| |||||||||||| || |||| |||||    
T  15996811 gtactacctccgtccctaattataagacccttttgaaaaaaaaatttgtccctttttataagacccctttgctattt 15996735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 30819878 - 30819953
Alignment:
Q  22 tactacctccgtcctttactataggaccctttt-agaacaaatatttgtctctttttataagatccttttgatattt 97  Q
    |||||||||||||| | |||||| ||||||||| |||| ||| | ||||| |||||||||||| || ||||||||||    
T  30819878 tactacctccgtccctaactataagacccttttgagaa-aaaaaattgtccctttttataagacccctttgatattt 30819953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 38670829 - 38670793
Alignment:
Q  22 tactacctccgtcctttactataggacccttttagaa 58  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  38670829 tactacctccgtcccttattataggacccttttagaa 38670793  T

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Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 404 - 461
Target Start/End: Complemental strand, 4636932 - 4636875
Alignment:
Q  404 tttgtattttgttatgccgcctaatttgtttattcattgggagtgttggagtgggggg 461  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  4636932 tttgaattttgtaatgccgcctaatttgtttattcattgggagtgttggagtgggggg 4636875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 9701070 - 9701145
Alignment:
Q  22 tactacctccgtcctttactataggacccttttagaacaaat-atttgtctctttttataagatccttttgatattt 97  Q
    |||||||||||||||| | |||| ||||||||| ||| |||| ||||||| |||||||||||| ||||||| |||||    
T  9701070 tactacctccgtccttaattataagaccctttt-gaaaaaataatttgtccctttttataagacccttttggtattt 9701145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 426 - 456
Target Start/End: Complemental strand, 14849264 - 14849234
Alignment:
Q  426 aatttgtttattcattgggagtgttggagtg 456  Q
    |||||||||||||||||||||||||||||||    
T  14849264 aatttgtttattcattgggagtgttggagtg 14849234  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 415 - 509
Target Start/End: Original strand, 38784853 - 38784947
Alignment:
Q  415 ttatgccgcctaatttgtttattcattgggagtgttggagtggggggataataaataaaaaggtccggaaaggtttgcgtatgatttgggaggtt 509  Q
    ||||||| |||||||||||||||||| || | ||||||||||||||  |  | || || ||  | |||||||| ||||||||||| |||||||||    
T  38784853 ttatgcctcctaatttgtttattcatcggaaatgttggagtgggggatttttcaacaagaaaattcggaaaggattgcgtatgatatgggaggtt 38784947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 22 - 97
Target Start/End: Complemental strand, 7116336 - 7116261
Alignment:
Q  22 tactacctccgtcctttactataggaccctttt-agaacaaatatttgtctctttttataagatccttttgatattt 97  Q
    |||||||||||||| | | |||| ||||||||| |||| ||| ||| ||| |||||||||||||||||||| |||||    
T  7116336 tactacctccgtccctaattataagacccttttgagaaaaaaaatt-gtccctttttataagatccttttgctattt 7116261  T

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Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 15496130 - 15496208
Alignment:
Q  21 gtactacctccgtcctttactataggacccttttagaacaaatatttgtctctttttataagatccttttgatattttc 99  Q
    ||||| ||||||||| ||| |||||||||||||||||| ||| | ||||| |||||||||||| |||||||||||||||    
T  15496130 gtactccctccgtcccttattataggacccttttagaaaaaaaaattgtccctttttataagacccttttgatattttc 15496208  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 17781384 - 17781462
Alignment:
Q  22 tactacctccgtcctttactataggacccttttagaacaaatat-ttgtctctttttataagatccttttgatattttc 99  Q
    |||||||||||||| ||| |||||||||||||||||| ||| |  ||||| ||||||||||||||||||||||||||||    
T  17781384 tactacctccgtcccttattataggacccttttagaaaaaaaaaattgtccctttttataagatccttttgatattttc 17781462  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 52575621 - 52575696
Alignment:
Q  22 tactacctccgtcctttactataggacccttttagaacaaatatttgtctctttttataagatccttttgatattttc 99  Q
    |||| ||||||||| ||| |||||||||||||||||  ||| | ||||| | |||||||||| |||||||||||||||    
T  52575621 tactccctccgtcccttattataggacccttttaga--aaaaaattgtccccttttataagacccttttgatattttc 52575696  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 18872717 - 18872792
Alignment:
Q  22 tactacctccgtcctttactataggacccttttagaacaaat-atttgtctctttttataagatccttttgatattt 97  Q
    |||||||||||||| | | |||| ||||||||| ||| |||| ||||||| ||||||||||||||| ||||||||||    
T  18872717 tactacctccgtccctaattataagaccctttt-gaaaaaataatttgtccctttttataagatccctttgatattt 18872792  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 19839990 - 19839911
Alignment:
Q  22 tactacctccgtcctttactataggacccttttagaacaaatat--ttgtctctttttataagatccttttgatattttc 99  Q
    ||||| |||||||| ||| |||||||||||||||||| ||| |   ||||  |||||||||||| |||||||||||||||    
T  19839990 tactatctccgtcccttattataggacccttttagaagaaaaaaaattgttcctttttataagacccttttgatattttc 19839911  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 24177417 - 24177456
Alignment:
Q  19 aggtactacctccgtcctttactataggacccttttagaa 58  Q
    ||||||||||||||||||||| |||| |||||||||||||    
T  24177417 aggtactacctccgtcctttattataagacccttttagaa 24177456  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 17261344 - 17261422
Alignment:
Q  22 tactacctccgtcctttactataggacccttttagaacaaatat-ttgtctctttttataagatccttttgatattttc 99  Q
    |||||||||||||| ||| ||||  ||| |||||||| ||| |  ||||||||||||||||||  ||||||||||||||    
T  17261344 tactacctccgtcccttattataaaaccattttagaagaaaaaaattgtctctttttataagactcttttgatattttc 17261422  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 24178095 - 24178019
Alignment:
Q  22 tactacctccgtcctttactataggacccttttagaacaaatatttgtctctttttataagatccttttgatattttc 99  Q
    ||||| || ||||| ||| ||||| |||||||||||| |||  | |||| |||||||||||| |||||||||||||||    
T  24178095 tactatcttcgtcccttattatagaacccttttagaaaaaaattgtgtccctttttataaga-ccttttgatattttc 24178019  T

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Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 180542 - 180646
Alignment:
Q  1 ttttatattaagaactggaggta---ctacctccgtcctttactat---aggacccttttagaacaaatatttgtctctttttataagatccttttgata 94  Q
    |||||||||||| || |||||||   |||||||||||| ||| |||   | ||||||||||||| |||||||||||||||||||||| ||| ||||||||    
T  180542 ttttatattaaggaccggaggtagtactacctccgtcccttattattataagacccttttagaaaaaatatttgtctctttttataaaatctttttgata 180641  T
Q  95 ttttc 99  Q
    |||||    
T  180642 ttttc 180646  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 156 - 270
Target Start/End: Original strand, 14459129 - 14459243
Alignment:
Q  156 cggaaggggagcggagggtgttccgacaaatttggaaaacgggggcaccttcaaaggtcatggcttttgtttggaagactcttttagatcgaattccgac 255  Q
    |||||||| || ||||||||||||| |||||||||||| |  |||||||||| ||||| || ||||||||||||||| ||||    ||| | ||||||||    
T  14459129 cggaagggaagaggagggtgttccgccaaatttggaaatccagggcaccttccaaggtgattgcttttgtttggaaggctctccgggataggattccgac 14459228  T
Q  256 gcgtgtcaacttgga 270  Q
     ||| ||||||||||    
T  14459229 ccgtctcaacttgga 14459243  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 454
Target Start/End: Original strand, 14459380 - 14459430
Alignment:
Q  404 tttgtattttgttatgccgcctaatttgtttattcattgggagtgttggag 454  Q
    |||| |||||||||||||||| ||||||||||| |||||||| ||||||||    
T  14459380 tttgaattttgttatgccgccgaatttgtttatccattgggaatgttggag 14459430  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 261
Target Start/End: Original strand, 20794130 - 20794211
Alignment:
Q  180 gacaaatttggaaaacgggggcaccttcaaaggtcatggcttttgtttggaagactcttttagatcgaattccgacgcgtgt 261  Q
    ||||||||||||| || |||||||| || ||||| | ||| |||||||||||  ||||| | ||||| ||||||||||||||    
T  20794130 gacaaatttggaagaccggggcaccgtccaaggtgagggcctttgtttggaaagctcttcttgatcggattccgacgcgtgt 20794211  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 4746169 - 4746088
Alignment:
Q  21 gtactacctccgtcctttactataggacccttttagaacaaatat---ttgtctctttttataagatccttttgatattttc 99  Q
    ||||| ||||||||| ||| ||||| | |||||||||| ||| |    ||||| ||||||||||||||||||||||||||||    
T  4746169 gtactccctccgtcccttattatagaatccttttagaagaaaaaaaaattgtccctttttataagatccttttgatattttc 4746088  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 346 - 456
Target Start/End: Complemental strand, 33113513 - 33113403
Alignment:
Q  346 ttttcctccattgcgaattggcatggaatgtttgggggaattgaatgaaatggcttgttttgtattttgttatgccgcctaatttgtttattcattggga 445  Q
    ||||||| ||||| || |||| | |||||||||||  ||| | |||| ||||||| | |||  ||||| | ||||| || ||||| ||||| ||||||||    
T  33113513 ttttccttcattgtgatttggtaaggaatgtttggatgaagttaatggaatggctagatttcaattttataatgcctccaaatttatttatccattggga 33113414  T
Q  446 gtgttggagtg 456  Q
    |||||||||||    
T  33113413 gtgttggagtg 33113403  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 39844725 - 39844798
Alignment:
Q  182 caaatttggaaaacgggggcaccttcaaaggtcatggcttttgtttggaagactcttttagatcgaattccgac 255  Q
    ||||||||||| || || || ||||||||||| ||||||||||||||||||  ||||||||| || ||||||||    
T  39844725 caaatttggaagaccggagctccttcaaaggtgatggcttttgtttggaaggttcttttagaccgtattccgac 39844798  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 153 - 261
Target Start/End: Original strand, 22196758 - 22196866
Alignment:
Q  153 gtccggaaggggagcggagggtgttccgacaaatttggaaaacgggggcaccttcaaaggtcatggcttttgtttggaagactcttttagatcgaattcc 252  Q
    ||||||| || ||| |||| |||||  ||||||||||||| || |||||| | || ||||| | || ||||||||||||| ||||| | ||| | |||||    
T  22196758 gtccggagggtgagaggagagtgtttagacaaatttggaagaccggggcatcgtctaaggtgagggattttgtttggaaggctcttcttgattggattcc 22196857  T
Q  253 gacgcgtgt 261  Q
    |||||||||    
T  22196858 gacgcgtgt 22196866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 153 - 261
Target Start/End: Complemental strand, 22241063 - 22240955
Alignment:
Q  153 gtccggaaggggagcggagggtgttccgacaaatttggaaaacgggggcaccttcaaaggtcatggcttttgtttggaagactcttttagatcgaattcc 252  Q
    ||||||| || ||| |||| |||||  ||||||||||||| || |||||| | || ||||| | || ||||||||||||| ||||| | ||| | |||||    
T  22241063 gtccggagggtgagaggagagtgtttagacaaatttggaagaccggggcatcgtctaaggtgagggattttgtttggaaggctcttcttgattggattcc 22240964  T
Q  253 gacgcgtgt 261  Q
    |||||||||    
T  22240963 gacgcgtgt 22240955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 32 - 99
Target Start/End: Original strand, 24282038 - 24282108
Alignment:
Q  32 gtcctttactataggacccttttagaacaaatat---ttgtctctttttataagatccttttgatattttc 99  Q
    |||||||| |||||||||||||||||| ||| |    ||||| |||||||||||| |||||||||||||||    
T  24282038 gtcctttattataggacccttttagaagaaaaaaaaattgtccctttttataagacccttttgatattttc 24282108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 404 - 554
Target Start/End: Original strand, 39844947 - 39845097
Alignment:
Q  404 tttgtattttgttatgccgcctaatttgtttattcattgggagtgttggagtggggggataataaataaaaaggtccggaaaggtttgcgtatgatttgg 503  Q
    |||| ||||||| ||||| || |||||  ||||||||||||| ||||||||||||||    || ||||| ||  | ||||| || ||||||||||| |||    
T  39844947 tttgaattttgtaatgccaccgaatttaattattcattgggaatgttggagtgggggatctattaataagaaaattcggaagggattgcgtatgatatgg 39845046  T
Q  504 gaggttgccatttgaatgatttggaaagtgaggaatgagcgcatctttaat 554  Q
    ||||| |  |||||  |||||||||| | ||| ||||| || || ||||||    
T  39845047 gaggtggtaatttgggtgatttggaaggcgagaaatgaccggatttttaat 39845097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0272 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 426 - 460
Target Start/End: Original strand, 2422 - 2456
Alignment:
Q  426 aatttgtttattcattgggagtgttggagtggggg 460  Q
    |||||||| ||||||||||||||||||||||||||    
T  2422 aatttgttcattcattgggagtgttggagtggggg 2456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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