View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9962_low_6 (Length: 225)
Name: NF9962_low_6
Description: NF9962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9962_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 13 - 209
Target Start/End: Complemental strand, 42009738 - 42009542
Alignment:
| Q |
13 |
tggacatcaagctctgactcacatctcagaagctcggcatgcatattcttaacaatggattcagtttcgcattctgtttccttcaattctgagtggtctc |
112 |
Q |
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| T |
42009738 |
tggacatcaagctctgactcacatctctgaagctcggcatgcatattcttaacaatggattcagtttcgcattctgtttccttcaattctgagtggtctc |
42009639 |
T |
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| Q |
113 |
tttttacatactccaaatccatccgaagagcttccaccaagcttctaagagagctttcttcttctgatactttctgcagtgtttccttagcaccatc |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42009638 |
tttttacatactccaaatccatccgaagagcttccaccaagcttctaagagagctttcttcttctgatactttctgcagtgtttccttagcaccatc |
42009542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 15 - 209
Target Start/End: Complemental strand, 1245074 - 1244880
Alignment:
| Q |
15 |
gacatcaagctctgactcacatctcagaagctcggcatgcatattcttaacaatggattcagtttcgcattctgtttccttcaattctgagtggtctctt |
114 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1245074 |
gacatcaagctctgactcacatctctgaagctcggcatgcatattcttaacaatggattcagtttcgcattctgtttccttcaattctgagtggtctctt |
1244975 |
T |
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| Q |
115 |
tttacatactccaaatccatccgaagagcttccaccaagcttctaagagagctttcttcttctgatactttctgcagtgtttccttagcaccatc |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1244974 |
tttacatactccaaatccatccgaagagcttccaccaagcttctaagagagctttcttcttctgatactttctgcagtgtttccttagcaccatc |
1244880 |
T |
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