View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9963_high_4 (Length: 402)
Name: NF9963_high_4
Description: NF9963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9963_high_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 5404034 - 5403623
Alignment:
| Q |
1 |
tttctttcttcttcagctttgaactacggaaatcgaagcaaccagctaagctgcaaaacaaagcttcagctaatccaatcaatggaatgcacaccataca |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
5404034 |
tttctttcttcttcagctctgaactacggaaatcgaagcaaccagctaagctgcaaaacaaagcttcagctattccaatcaatggaatgcacaccataca |
5403935 |
T |
|
| Q |
101 |
tagtgtttctccaatcgtcaacctcgacccctgatgaatatgaatgataaagaacaaattcgaaatcaagaataatgataatgat------tgaatttct |
194 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5403934 |
tagtgtttctccaatcgtcaacctcgacccctaatgaatatgaatgataaagaacaaattcgaaatcaagaataatgataatgatgatgattgaatttct |
5403835 |
T |
|
| Q |
195 |
gggtaatgaat----cagaaattgaaatatatatgaaaggttaataagaaaattgaatttaccagagattgagagttttcttccatgtcaacttagcatt |
290 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5403834 |
gggtaatgaatgaatcagaaattgaaatatatatgaaaggttaataagaaaattgaatttaccagagattgagagttttcttccatgtcaacttagcatt |
5403735 |
T |
|
| Q |
291 |
gcaaaacttattcttcaagggatcacgatccaaatttatttttgtctttttcgatggatttggattggattcagaattcaaacttttccactttcggctt |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5403734 |
gcaaaacttattcttcaagggatcacgatccaaatttatttttgtctttttcgatggatttggattggattcagaattcaaacttttccactttcggctt |
5403635 |
T |
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| Q |
391 |
atgtcatgtttt |
402 |
Q |
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|||||||||||| |
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| T |
5403634 |
atgtcatgtttt |
5403623 |
T |
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