View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9963_high_9 (Length: 315)

Name: NF9963_high_9
Description: NF9963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9963_high_9
NF9963_high_9
[»] chr2 (13 HSPs)
chr2 (1-296)||(39492417-39492704)
chr2 (140-246)||(39132114-39132220)
chr2 (140-242)||(2363527-2363629)
chr2 (132-241)||(39605075-39605184)
chr2 (140-183)||(39470309-39470352)
chr2 (5-101)||(39470851-39470947)
chr2 (163-242)||(39372209-39372288)
chr2 (163-242)||(39379517-39379596)
chr2 (152-242)||(39188303-39188393)
chr2 (140-242)||(39386312-39386413)
chr2 (169-246)||(39126259-39126336)
chr2 (141-242)||(39179698-39179798)
chr2 (143-188)||(39503154-39503199)
[»] chr4 (1 HSPs)
chr4 (150-242)||(33153107-33153199)
[»] chr3 (1 HSPs)
chr3 (169-236)||(51576903-51576970)


Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 39492704 - 39492417
Alignment:
Q  1 agtgtttttactggaaacagcgagtgttatcctcctaataagaaacaacctaatgtaaagatatgtggtagagaaaacccgctaacacattcccttgtaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39492704 agtgtttttactggaaacagcgagtgttatcctcctaataagaaacaacctaatgtaaagatatgtggtagagaaaacccgctaacacattcccttgtaa 39492605  T
Q  101 acgagttaacagatttatcgcagattcgcagaactagtcagttttgataaagtgaaattttgttgcagcttgtagattttgttcagaatctcatcagaaa 200  Q
    ||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  39492604 acgagttaacagatttatcgcaga--------actagtcagttttgataaagtgaaattttgttgcagcttgtagattttgttcagaatgtcatcagaaa 39492513  T
Q  201 gtagcaatatattgaagctgttagattcatttgtgcatataataacacggctgaaaggcaaatagtatttgtataggaagcacatcatgtattaac 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  39492512 gtagcaatatattgaagctgttagattcatttgtgcatataataacacggctgaaaggtaaatagtattggtataggaagcacatcatgtattaac 39492417  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 140 - 246
Target Start/End: Original strand, 39132114 - 39132220
Alignment:
Q  140 agttttgataaagtgaaattttgttgcagcttgtagattttgttcagaatctcatcagaaagtagcaatatattgaagctgttagattcatttgtgcata 239  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||| |||  |||| |||||| ||||||||||||| || |||| | |||||||||||    
T  39132114 agttttgataaagtgaaattatgttgcagtttgtagattttgttcaggatcatatcataaagtaacaatatattgaagatggtagactaatttgtgcata 39132213  T
Q  240 taataac 246  Q
    | |||||    
T  39132214 ttataac 39132220  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 140 - 242
Target Start/End: Original strand, 2363527 - 2363629
Alignment:
Q  140 agttttgataaagtgaaattttgttgcagcttgtagattttgttcagaatctcatcagaaagtagcaatatattgaagctgttagattcatttgtgcata 239  Q
    ||||||||| ||||||||||||  |||| |||| |||||||||||||||||| ||||  ||| ||||||||||||| |||||||||||||| || |||||    
T  2363527 agttttgatgaagtgaaattttcctgcaccttgcagattttgttcagaatcttatcatgaagcagcaatatattgaggctgttagattcatctgcgcata 2363626  T
Q  240 taa 242  Q
    |||    
T  2363627 taa 2363629  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 241
Target Start/End: Original strand, 39605075 - 39605184
Alignment:
Q  132 aactagtcagttttgataaagtgaaattttgttgcagcttgtagattttgttcagaatctcatcagaaagtagcaatatattgaagctgttagattcatt 231  Q
    ||||||| ||||||| | ||||||||||||| |||| |||| ||||||||||||||| || ||||  ||| | ||| |||||||||||| ||||||||||    
T  39605075 aactagttagttttgttgaagtgaaattttggtgcaccttgcagattttgttcagaaacttatcatgaagaaacaaaatattgaagctgctagattcatt 39605174  T
Q  232 tgtgcatata 241  Q
     |||| ||||    
T  39605175 cgtgcttata 39605184  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 183
Target Start/End: Complemental strand, 39470352 - 39470309
Alignment:
Q  140 agttttgataaagtgaaattttgttgcagcttgtagattttgtt 183  Q
    |||| ||||||||||||||||||||||| |||||||||||||||    
T  39470352 agttatgataaagtgaaattttgttgcaccttgtagattttgtt 39470309  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 101
Target Start/End: Complemental strand, 39470947 - 39470851
Alignment:
Q  5 tttttactggaaacagcgagtgttatcctcctaataagaaacaacctaatgtaaagatatgtggtagagaaaacccgctaacacattcccttgtaaa 101  Q
    ||||||||||||  || |||||| ||| ||| |||| | |||||||||||||| || || ||||||| ||||||| |||||||  || |||||||||    
T  39470947 tttttactggaagtagtgagtgtcatcttccaaatacgcaacaacctaatgtatagttacgtggtagcgaaaacctgctaacatgtttccttgtaaa 39470851  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 242
Target Start/End: Original strand, 39372209 - 39372288
Alignment:
Q  163 ttgcagcttgtagattttgttcagaatctcatcagaaagtagcaatatattgaagctgttagattcatttgtgcatataa 242  Q
    ||||| |||| |||||||||| ||||||| || || | | |||||| | ||| ||||||||||||||||| |||||||||    
T  39372209 ttgcaccttgcagattttgttgagaatcttattaggaggaagcaatttgttgtagctgttagattcatttctgcatataa 39372288  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 242
Target Start/End: Complemental strand, 39379596 - 39379517
Alignment:
Q  163 ttgcagcttgtagattttgttcagaatctcatcagaaagtagcaatatattgaagctgttagattcatttgtgcatataa 242  Q
    ||||| |||| |||||||||| ||||||| ||||  | | |||||| | ||| |||||||||||||| ||||||||||||    
T  39379596 ttgcaccttgcagattttgttgagaatcttatcaagaggaagcaatttgttgtagctgttagattcagttgtgcatataa 39379517  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 242
Target Start/End: Complemental strand, 39188393 - 39188303
Alignment:
Q  152 gtgaaattttgttgcagcttgtagattttgttcagaatctcatcagaaagtagcaatatattgaagctgttagattcatttgtgcatataa 242  Q
    |||| ||||| ||||| || | ||||||||| |||| ||| ||||  ||  ||||||||  ||||||||||||||||| ||||||||||||    
T  39188393 gtgagattttcttgcacctggcagattttgtacagagtcttatcaagaaacagcaatatgatgaagctgttagattcagttgtgcatataa 39188303  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 242
Target Start/End: Complemental strand, 39386413 - 39386312
Alignment:
Q  140 agttttgataaagtgaaattttgttgcagcttgtagattttgttcagaatctcatcagaaagtagcaatatattgaagctgttagattcatttgtgcata 239  Q
    |||| |||| |||||||||||  ||||| |||  |||||||||| || |||| ||||  | | |||||| | |||||||||||||||||| |||||||||    
T  39386413 agttatgatgaagtgaaatttc-ttgcatcttccagattttgttaagcatcttatcaagaggaagcaatttgttgaagctgttagattcagttgtgcata 39386315  T
Q  240 taa 242  Q
    |||    
T  39386314 taa 39386312  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 246
Target Start/End: Original strand, 39126259 - 39126336
Alignment:
Q  169 cttgtagattttgttcagaatctcatcagaaagtagcaatatattgaagctgttagattcatttgtgcatataataac 246  Q
    |||| |||||||| | ||||||  ||| | |||| |||| |||| |||| |||| |||||||||||||||||||||||    
T  39126259 cttgcagattttgcttagaatcatatctggaagttgcaacatatggaagttgtttgattcatttgtgcatataataac 39126336  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 242
Target Start/End: Original strand, 39179698 - 39179798
Alignment:
Q  141 gttttgataaagtgaaattttgttgcagcttgtagattttgttcagaatctcatcagaaagtagcaatatattgaagctgttagattcatttgtgcatat 240  Q
    |||||||| |||||||||||  ||||| |||| |||||||||| || |||| ||||  | | |||||  | ||| |||||||||||||| ||||||||||    
T  39179698 gttttgatgaagtgaaatttc-ttgcatcttgcagattttgttaagcatcttatcaacaggaagcaaattgttgcagctgttagattcagttgtgcatat 39179796  T
Q  241 aa 242  Q
    ||    
T  39179797 aa 39179798  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 39503199 - 39503154
Alignment:
Q  143 tttgataaagtgaaattttgttgcagcttgtagattttgttcagaa 188  Q
    |||||| |||||||||||||||| | |||| |||||||||||||||    
T  39503199 tttgatgaagtgaaattttgttgtaccttgcagattttgttcagaa 39503154  T

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Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 150 - 242
Target Start/End: Original strand, 33153107 - 33153199
Alignment:
Q  150 aagtgaaattttgttgcagcttgtagattttgttcagaatctcatcagaaagtagcaatatattgaagctgttagattcatttgtgcatataa 242  Q
    |||||||| ||| ||||| |||| |||||||||||||||||| ||| | ||| ||||| |||||||||||||||||||||| ||||| |||||    
T  33153107 aagtgaaactttattgcaacttgcagattttgttcagaatcttatccggaagaagcaacatattgaagctgttagattcatatgtgcttataa 33153199  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 169 - 236
Target Start/End: Original strand, 51576903 - 51576970
Alignment:
Q  169 cttgtagattttgttcagaatctcatcagaaagtagcaatatattgaagctgttagattcatttgtgc 236  Q
    |||| |||||||||||||||||| |||   ||  ||||| || |||||||||||||||||||||||||    
T  51576903 cttgcagattttgttcagaatcttatcgataatcagcaacatgttgaagctgttagattcatttgtgc 51576970  T

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