View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9963_low_1 (Length: 785)
Name: NF9963_low_1
Description: NF9963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9963_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 320 - 770
Target Start/End: Original strand, 39085528 - 39085976
Alignment:
| Q |
320 |
atttaaatttgtccatagttcaatcactaaagtcacgtgcagaagataccattgatttagttataacgattaatctctaaaattatgtgcaaaagatacc |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39085528 |
atttaaatttgtccatagttcaatcactaaagtcacgtgcagaagataccattgatttagttataacgattaatctctaaaattatgtgcaaaagatacc |
39085627 |
T |
|
| Q |
420 |
tttggttaaaataaaataaaaagtttgactctacatttcagaaccctccaatccatgcctccatttggatagattaaacaaataccaagaaatgtatata |
519 |
Q |
| |
|
||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39085628 |
tttggttaaaaaaaaa--agaagtttgactctacatttcagaaccctccaatccatgcctccatttggatagatgaaacaaataccaagaaatgtatata |
39085725 |
T |
|
| Q |
520 |
aaaatgaattggtgttaatggttattgcaacttttcttcacgttttaaatacatacgcactaaaaagtacnnnnnnnttacaaagccattcaatcaattt |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
39085726 |
aaaatgaattggtgttaatggttattgcaacttttcttcacgttttaaatacatacgcactaaaaagtacaaaaaaattacaaagccattcaatcaattt |
39085825 |
T |
|
| Q |
620 |
tcaccatttaaatacatattgttttctaaaacacacgtacatatatgtaatctgtagcatttaattagacatgtaatatcaaaaacatacatatcaaatg |
719 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39085826 |
tcaccatttaaatacatattgttttctaaaacacacgtacatatatgtaatctgtagcatttaattagacatgtaatatcaaaaacatacatatcaaatg |
39085925 |
T |
|
| Q |
720 |
atatatctgcagcctgcacattgcacaatgttacggtttatccagcacagg |
770 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39085926 |
ctatatctgcagcctgcacattgcacaatgttacggtttatccagcacagg |
39085976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 39083239 - 39083473
Alignment:
| Q |
17 |
acaattaacttaaaaaagtttgtttagaaatttttgcattccagaatttgatttcctaatgagaatgaggaatatcaatatctattagaaaagtgacgtg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39083239 |
acaattaacttaaaaaagtttgtttagaaatttttgcattccagaatttggtttcctaatgagaatgaggaatatcaatatctattagaaaagtgacgtg |
39083338 |
T |
|
| Q |
117 |
cattcccataaagggcgatgtaggatagaagtgtgtattgtaaagtacgtaattacaaatattagagaaaaagtttttgttatcgtctaaagtttgtgtt |
216 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39083339 |
cattcccataaagggcaatgtaggatagaagtgtgtattgtaaagtacgtaattacaaatattagagaaaaagtttttgttatcgtctaaagtttgtgtt |
39083438 |
T |
|
| Q |
217 |
attgtctcagtttacaaaaattagctttgctcgga |
251 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||| |
|
|
| T |
39083439 |
attgtctcggtttacaaaaattagctttgcccgga |
39083473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 17 - 199
Target Start/End: Original strand, 31728074 - 31728256
Alignment:
| Q |
17 |
acaattaacttaaaaaagtttgtttagaaatttttgcattccagaatttgatttcctaatgagaatgaggaatatcaatatctattagaaaagtgacgtg |
116 |
Q |
| |
|
||||||||||| || |||||| || ||| |||| ||| ||||||||||| ||||||||||||||||||||||| |||||| ||||| ||||| || || |
|
|
| T |
31728074 |
acaattaacttgaataagtttagtttgaatttttggcaatccagaatttggtttcctaatgagaatgaggaatacaaatatcgattaggaaagtaacatg |
31728173 |
T |
|
| Q |
117 |
cattcccataaagggcgatgtaggatagaagtgtgtattgtaaagtacgtaattacaaatattagagaaaaagtttttgttat |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||| |||||| |
|
|
| T |
31728174 |
cattcccataaagggcgatgtaggatagaagtgtgtgttgtaaagtacttaattacgaatattagagaaaaagtttatgttat |
31728256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 352 - 426
Target Start/End: Original strand, 31728438 - 31728517
Alignment:
| Q |
352 |
tcacgtgcagaagataccattgatttagttataac-----gattaatctctaaaattatgtgcaaaagatacctttggtt |
426 |
Q |
| |
|
|||| |||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
31728438 |
tcacatgcaaaaaataccattgatttagttataacttaaagattaatctctaaaattatgtgcaaaagatacatttggtt |
31728517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University