View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9963_low_10 (Length: 391)
Name: NF9963_low_10
Description: NF9963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9963_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 18 - 381
Target Start/End: Original strand, 336149 - 336513
Alignment:
| Q |
18 |
taaactagatgagtgacacattgccacatacacttcttataataataaataataggatatggtcatgtgagagtttgatatacacaagttagttaatt-a |
116 |
Q |
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| T |
336149 |
taaactagatgagtgacacattgccacatacacttcttataataataaataataggatatggtcatgtgagagtttgatatacacaagttagttaattta |
336248 |
T |
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| Q |
117 |
tatagttaactcttttttaccgtaactctttcatttcatcataaattggagagtcctatcccagttactccaaaacaagatcatatggatacattagctt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
336249 |
tatagttaactcttttttaccgtaactctttcatttcatcataaattggagagtcctatcccagttactccaaaacaagatcatatggatacattagctt |
336348 |
T |
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| Q |
217 |
cagaatgcagcagtgggtgtgagtctggatggactctataccttgaccgttctctcaatacctcacaatcacatacaccttcacttggttgttatgaaga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
336349 |
cagaatgcagcagtgggtgtgagtctggatggactctataccttgaccgttctctcaatacctcacaatcacatacaccttcacttggttgttatgaaga |
336448 |
T |
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| Q |
317 |
aactaaacacaaaaaggctcaaaatattgaggactctgatgaagaggacttgtccatggtctctg |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
336449 |
aactaaacacaaaaaggctcaaaatattgaggactctgatgaagaggacttgtccatggtttctg |
336513 |
T |
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