View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9963_low_11 (Length: 390)
Name: NF9963_low_11
Description: NF9963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9963_low_11 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 13219283 - 13219671
Alignment:
| Q |
1 |
aaagaaaaatgttagcatatttttagaactatatacatacatatagatcctnnnnnnncaatccgcttaggtttagttgatctcttggtagtcgaataaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13219283 |
aaagaaaaatgttagcatatttttagaactatatacatacatatagatcctaaaaaaacaatccgcttaggtttagttgatctcttggtagtcgaataaa |
13219382 |
T |
|
| Q |
101 |
gggaaataacactatgaataagagaatttgagtgaggcaaatctttatcaattcctaatgatttcacgaaggccgtaggaatgttataatcggtcaaaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13219383 |
gggaaataacactatgaataagagaatttgagtgaggcaaatctttatcaattcctaatgatttcacgaaggccgtaggaatgttataatcggtcaaaga |
13219482 |
T |
|
| Q |
201 |
cggatgggaattgataatttggcttcaagacttgttttcctaatgattcctaannnnnnnnaatttattttagcctctt-nnnnnnnnntagcaactatt |
299 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
13219483 |
cggatgggaattgataatttagcttcaagacttgtgttcctaatgattccta--ttttttttatttattttagcctcttaaaaaaaaaatagcaactatt |
13219580 |
T |
|
| Q |
300 |
ttctcaagtatgatcagaagtgaaaaattatgtgttgataaggggaattggaaatggcacgaaacaaagagaagtcaagtcaaatgtgagg |
390 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
13219581 |
ttctcaagtatgatcagaagtggaaaattatgtgttgataaggggaattggaaatgccacgaaacaaagagaagtcaaatcaaatgtgagg |
13219671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University