View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9963_low_14 (Length: 332)
Name: NF9963_low_14
Description: NF9963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9963_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 318
Target Start/End: Original strand, 33859265 - 33859565
Alignment:
| Q |
18 |
tggctggcgtgatcctggttttatacacacaagtttccttaaagaactttggccaaatatgaagtacgcatttagtcattttcatgacacaagtttttcc |
117 |
Q |
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| T |
33859265 |
tggctggcgtgatcctggttttatacacacaagtttccttaaagaactttggccaaatatgaagtacgcatttagtcattttcatgacacaagtttttcc |
33859364 |
T |
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| Q |
118 |
tcttaactttcaagttcgacaaaagttctcaaagcttaacaactttccttgttctttccccaggtacacatacaggttagggcatttcttatctgatggc |
217 |
Q |
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| T |
33859365 |
tcttaactttcaagttcgacaaaagttctcaaagcttaacagctttccttgttctttccccaggtacacatacaggttagggcatttcttatctgatggc |
33859464 |
T |
|
| Q |
218 |
tcttatgtatggagtaagaggtattcattcaaggcatctccgtatcctggacagaactcattgcaacgtgttatcatatttggtgacatgggaaaggtag |
317 |
Q |
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| T |
33859465 |
tcttatgtatggagtaagaggtattcattcaaggcatctccgtatcctggacagaactcattgcaacgtgttatcatatttggtgacatgggaaaggtag |
33859564 |
T |
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| Q |
318 |
t |
318 |
Q |
| |
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| |
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| T |
33859565 |
t |
33859565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 317
Target Start/End: Original strand, 33869588 - 33869887
Alignment:
| Q |
18 |
tggctggcgtgatcctggttttatacacacaagtttccttaaagaactttggccaaatatgaagtacgcatttagtcattttcatgacacaagtttttcc |
117 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||| ||||||||| | |
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| T |
33869588 |
tggctggcgcgatcctggttttatacacacaagtttccttaaagaactttggccaaatatgaggtatgcattcagtcattttcatgacgcaagttttttc |
33869687 |
T |
|
| Q |
118 |
tcttaactttcaagttcgacaaaagttctcaaagcttaacaactttccttgttctttccccaggtacacatacaggttagggcatttcttatctgatggc |
217 |
Q |
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| T |
33869688 |
gcttaactttccagttcgacaaaagttcacaaagcttagcaatcttccttgttctttccccaggtacacctacaggttagggcatttcatgtctgacggt |
33869787 |
T |
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| Q |
218 |
tcttatgtatggagtaagaggtattcattcaaggcatctccgtatcctggacagaactcattgcaacgtgttatcatatttggtgacatgggaaaggtag |
317 |
Q |
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| T |
33869788 |
tcttatgtatggagtaagaggtattcattcaaggcatctccatatcctggacaaaactcgttgcaacgcgttataatatttggtgacatgggaaaggtag |
33869887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 178 - 317
Target Start/End: Original strand, 33874223 - 33874362
Alignment:
| Q |
178 |
caggtacacatacaggttagggcatttcttatctgatggctcttatgtatggagtaagaggtattcattcaaggcatctccgtatcctggacagaactca |
277 |
Q |
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| T |
33874223 |
caggtacacctacaggttagggcatttcttatctgatggttcttatgtatggagtaagaggtattcattcaaggcatctccgtatcctggacagaactca |
33874322 |
T |
|
| Q |
278 |
ttgcaacgtgttatcatatttggtgacatgggaaaggtag |
317 |
Q |
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| T |
33874323 |
ttgcaacgtgttatcatattcggtgacatgggaaaggtag |
33874362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 33874076 - 33874137
Alignment:
| Q |
18 |
tggctggcgtgatcctggttttatacacacaagtttccttaaagaactttggccaaatatga |
79 |
Q |
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| T |
33874076 |
tggctggcgtgatcctggttttatacatacaagttttcttaaagaactttggccaaatatga |
33874137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 275239 - 275178
Alignment:
| Q |
18 |
tggctggcgtgatcctggttttatacacacaagtttccttaaagaactttggccaaatatga |
79 |
Q |
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| T |
275239 |
tggctggcgtgatcctggttttatacatacaagtttccttaaagaactttggccaaatatga |
275178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 872970 - 873031
Alignment:
| Q |
18 |
tggctggcgtgatcctggttttatacacacaagtttccttaaagaactttggccaaatatga |
79 |
Q |
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| T |
872970 |
tggctggcgtgatcctggttttatacatacaagtttccttaaagaactttggccaaatatga |
873031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 239 - 316
Target Start/End: Original strand, 42783116 - 42783193
Alignment:
| Q |
239 |
tattcattcaaggcatctccgtatcctggacagaactcattgcaacgtgttatcatatttggtgacatgggaaaggta |
316 |
Q |
| |
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|||||||| ||| |||| || |||||||||||| ||||| ||||||||||| ||||||||||||||||||| |||||| |
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| T |
42783116 |
tattcatttaagtcatcgccttatcctggacaggactcactgcaacgtgttgtcatatttggtgacatggggaaggta |
42783193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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