View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9963_low_15 (Length: 321)
Name: NF9963_low_15
Description: NF9963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9963_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 33 - 320
Target Start/End: Complemental strand, 44913185 - 44912898
Alignment:
| Q |
33 |
gatactgacctatgcatttggcaaagagagagcgatgaagaaaagcatcatgagttgaaagaatatcaaactgcttttcaacctcaaaccatccaacatc |
132 |
Q |
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| T |
44913185 |
gatactgacctatgcatttggcaaagagagagcgatgaagaaaagcatcatgagttgaaagaatatcaaactgcttttcaacctcaaaccatccaacatc |
44913086 |
T |
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| Q |
133 |
agtcttattattgataaacttgagtcctctaagagcatgagaagctgcagacttagtcctatcataaactttctgaggtccaacttgtttcgaaaaagaa |
232 |
Q |
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| T |
44913085 |
agtcttattattgataaacttgagtcctctaagagcatgagaagctgcagacttagtcctatcataaactttctgaggtccaacttgtttcgaaaaagaa |
44912986 |
T |
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| Q |
233 |
gttaatttcttcaactcctgagaaacatgtttcatacgaatcgaagcagttctaacaaaagaagcaccaaaagatctctgcttctcca |
320 |
Q |
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| T |
44912985 |
gttaatttcttcaactcctgagaaacatgtttcatacgaatcgaagcagttctaacaaaagaagcaccaaaagatcttttcttctcca |
44912898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 198
Target Start/End: Complemental strand, 44882886 - 44882832
Alignment:
| Q |
144 |
tgataaacttgagtcctctaagagcatgagaagctgcagacttagtcctatcata |
198 |
Q |
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| T |
44882886 |
tgataaagttaagtcctttgagagcattagaagctgcagacgtagtcctatcata |
44882832 |
T |
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