View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9963_low_16 (Length: 319)
Name: NF9963_low_16
Description: NF9963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9963_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 15 - 306
Target Start/End: Complemental strand, 42815102 - 42814811
Alignment:
| Q |
15 |
aggtttagctgtgaactttaaattatgggggactaaagtgcacttttcaattttcattgttaataaagaaatcatctcacaaattgatgcttatatgttt |
114 |
Q |
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| T |
42815102 |
aggtttagctgtgaactttaaattatgggggactaaagtgcacttttcaattttcattgttaataaagaaatcatctcacaaattgatgcttatatgttt |
42815003 |
T |
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| Q |
115 |
cagcaacagccaagaagggagaaggnnnnnnnnngtggtgtgataattgagaatccaaggaaaaatagaactnnnnnnnnnnnngctaaagtttgattct |
214 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
42815002 |
cagcaacagccaagaagggagaaggaaaaaaaaagtggtgtgataattgagaatccaaggaaaaatagaactaaaaaagaaaaagctaaagtttgattct |
42814903 |
T |
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| Q |
215 |
cctttgtactttataaagaaaaagcattctttaacaaaagtgaactgtattctcctaattttaaaaagatcagcaacataaatcattgatgt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42814902 |
cctttgtactttataaagaaaaagcattctttaacaaaagtgaactgtattctcctaattttaaaaagatcagcaacataaatcattgatgt |
42814811 |
T |
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