View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9963_low_18 (Length: 302)
Name: NF9963_low_18
Description: NF9963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9963_low_18 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 12 - 302
Target Start/End: Original strand, 33858998 - 33859288
Alignment:
| Q |
12 |
gacatcagtgaagctgtaccgtttgtggaatggggtccaaagggaggaaagcagatacaatctgctgccggaacattgacatttaatcgtaacagcatgt |
111 |
Q |
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| T |
33858998 |
gacataagtgaagctgtaccgtttgtggaatggggtccaaagggaggaaagcagatacaatctgctgccggaacattgacatttaatcgtaacagcatgt |
33859097 |
T |
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| Q |
112 |
gtggtaaggattattacatggtcaagtttatacaataaactttaaaatttaatcgaacaatgcttcattaggtagcatagcatagtaactctttcttttt |
211 |
Q |
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| T |
33859098 |
gtggtaaggattattacatggtcaagtttatacaataaactttaaaatttaatcgaacaatgcttcattaggtagcatagcatagtaactctttcttttt |
33859197 |
T |
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| Q |
212 |
ctaaaaattaatatcatcaaataatgaggacattttgttgatttgtaggtgaacctgcgcgaaccgttggctggcgtgatcctggttttat |
302 |
Q |
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| T |
33859198 |
ctaaaaattaatatcatcaaataataaggacattttgttgatttgtaggtgaacctgcgcgaaccgttggctggcgtgatcctggttttat |
33859288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 20 - 130
Target Start/End: Original strand, 33873866 - 33873976
Alignment:
| Q |
20 |
tgaagctgtaccgtttgtggaatggggtccaaagggaggaaagcagatacaatctgctgccggaacattgacatttaatcgtaacagcatgtgtggtaag |
119 |
Q |
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| T |
33873866 |
tgaagttgtcccatttgttgaatggggtccaaagggtggaaagcagatacaatctgctgctggaacactaacattcaatcgtaacagcatgtgtggtatg |
33873965 |
T |
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| Q |
120 |
gattattacat |
130 |
Q |
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| T |
33873966 |
gattattacat |
33873976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 33869362 - 33869488
Alignment:
| Q |
12 |
gacatcagtgaagctgtaccgtttgtggaatggggtccaaagggaggaaagcag--------atacaatctgctgccggaacattgacatttaatcgtaa |
103 |
Q |
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| T |
33869362 |
gacataagtgaagctgtaccgttcgtggaatggggtctaaagggtggaaagcagatacgcagatacaatctgctgctggaacattgacatttaatcgtaa |
33869461 |
T |
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| Q |
104 |
cagcatgtgtggtaaggattattacat |
130 |
Q |
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| T |
33869462 |
cagcatgtgtggtatgtattactacat |
33869488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 207 - 302
Target Start/End: Original strand, 33874004 - 33874099
Alignment:
| Q |
207 |
tttttctaaaaattaatatcatcaaataatgaggacattttgttgatttgtaggtgaacctgcgcgaaccgttggctggcgtgatcctggttttat |
302 |
Q |
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| T |
33874004 |
tttttctaaaaatgaatcttaacgaataatgaggacattttcttaatatgcaggtcaacctacacgaactgttggctggcgtgatcctggttttat |
33874099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 205 - 302
Target Start/End: Original strand, 33869514 - 33869611
Alignment:
| Q |
205 |
tctttttctaaaaattaatatcatcaaataatgaggacattttgttgatttgtaggtgaacctgcgcgaaccgttggctggcgtgatcctggttttat |
302 |
Q |
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| T |
33869514 |
tctttttctaaaaatgaatctcaacatatattgaggacattttgtttatcgataggccaacctgcacgaactgttggctggcgcgatcctggttttat |
33869611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 275457 - 275339
Alignment:
| Q |
12 |
gacatcagtgaagctgtaccgtttgtggaatggggtccaaagggaggaaagcagatacaatctgctgccggaacattgacatttaatcgtaacagcatgt |
111 |
Q |
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||||| |||||||| ||||| ||||| | ||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||| |||||||||| |
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| T |
275457 |
gacataagtgaagcagtaccatttgttggatggggtccaaagggtggaaagcagatacaatctgctgctggaacactgacatttaatcgcaacagcatgt |
275358 |
T |
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| Q |
112 |
gtggtaaggattattacat |
130 |
Q |
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|||||| |||||||||||| |
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| T |
275357 |
gtggtatggattattacat |
275339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 205 - 302
Target Start/End: Complemental strand, 275313 - 275216
Alignment:
| Q |
205 |
tctttttctaaaaattaatatcatcaaataatgaggacattttgttgatttgtaggtgaacctgcgcgaaccgttggctggcgtgatcctggttttat |
302 |
Q |
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| T |
275313 |
tctttttctaaaaatgaatctcaacatataatgcggacattttgttaatctgtaggtcaacctgcacgaaccgttggctggcgtgatcctggttttat |
275216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 872752 - 872870
Alignment:
| Q |
12 |
gacatcagtgaagctgtaccgtttgtggaatggggtccaaagggaggaaagcagatacaatctgctgccggaacattgacatttaatcgtaacagcatgt |
111 |
Q |
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||||| |||||||| ||||| ||||| | ||||||||||||||| ||||||||||||||||||||||| |||||| ||||||| || || |||||||||| |
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| T |
872752 |
gacataagtgaagcagtaccatttgttggatggggtccaaagggtggaaagcagatacaatctgctgctggaacactgacattcaaccgcaacagcatgt |
872851 |
T |
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| Q |
112 |
gtggtaaggattattacat |
130 |
Q |
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|||||| |||||||||||| |
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| T |
872852 |
gtggtatggattattacat |
872870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 205 - 302
Target Start/End: Original strand, 872896 - 872993
Alignment:
| Q |
205 |
tctttttctaaaaattaatatcatcaaataatgaggacattttgttgatttgtaggtgaacctgcgcgaaccgttggctggcgtgatcctggttttat |
302 |
Q |
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| T |
872896 |
tctttttctaaaaatgaatctcaacatataatgcggacattttgttaatctgtaggtcaacctgcacgaaccgttggctggcgtgatcctggttttat |
872993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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