View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9963_low_19 (Length: 294)
Name: NF9963_low_19
Description: NF9963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9963_low_19 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 13 - 294
Target Start/End: Complemental strand, 336767 - 336486
Alignment:
| Q |
13 |
agcagagaagccttgtgaataatctagcatactctctgtcgttgaagttgtttgttggttgctcatagtaacaacattgttgttgtcaaagagaggagag |
112 |
Q |
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| T |
336767 |
agcagagaagccttgtgaataatctagcatactctctgtcgttgaagttgtttgttggttgctcatagtaacaacattgttgttgtcaaagagaggagag |
336668 |
T |
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| Q |
113 |
ctagcagtgtcatcaaggtgctgctgaatattattattttcttgaactttctgtctctttttacttctcttggcaacaagttttgttggcttagatgcag |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
336667 |
ctagcagtgtcatcaaggtgctgctgaatattattattttcttgaactttctgtctctttttacttctcttggcaacaagttttgttggcttagatgcag |
336568 |
T |
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| Q |
213 |
aacagtcttgtgcattgaagtaagagtcatggtgtggaggaccagaagaagcatcagaaaccatggacaagtcctcttcatc |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
336567 |
aacagtcttgtgcattgaagtaagagtcatggtgtggaggaccagaagaagcatcagaaaccatggacaagtcctcttcatc |
336486 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 282
Target Start/End: Original strand, 48011835 - 48011872
Alignment:
| Q |
245 |
tgtggaggaccagaagaagcatcagaaaccatggacaa |
282 |
Q |
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| T |
48011835 |
tgtggaggaccagaagaagcatcagaaaccatagacaa |
48011872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 279
Target Start/End: Complemental strand, 47592082 - 47592048
Alignment:
| Q |
245 |
tgtggaggaccagaagaagcatcagaaaccatgga |
279 |
Q |
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|||||||| |||||||||||||||||||||||||| |
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| T |
47592082 |
tgtggaggtccagaagaagcatcagaaaccatgga |
47592048 |
T |
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