View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9963_low_21 (Length: 281)
Name: NF9963_low_21
Description: NF9963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9963_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 9 - 183
Target Start/End: Complemental strand, 31071110 - 31070938
Alignment:
| Q |
9 |
agcagagaagaatgtatatcactgttttgcttctctagacgtttatataatagccaagtttatgttttattatataaaatattgtaaggtagtacccatt |
108 |
Q |
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|||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
31071110 |
agcaaagaagaatgtatatcactgttttgcttctctaaacgtttatataatcgccaagtttatgttttattata--aaatattgtaaggtagtacccatt |
31071013 |
T |
|
| Q |
109 |
aaaagagaataccacctttagttgagagtgtcgtgcaaattcgtgtgttaacttgtcgtaccgtatagcaactct |
183 |
Q |
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||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
31071012 |
aaaagagaataccacctttagttgaaagtgccgtgcaaattcgtatgttaacttgtcgtaccgtatagcaactct |
31070938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 81 - 183
Target Start/End: Original strand, 229445 - 229547
Alignment:
| Q |
81 |
tataaaatattgtaaggtagtacccattaaaagagaataccacctttagttgagagtgtcgtgcaaattcgtgtgttaacttgtcgtaccgtatagcaac |
180 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
229445 |
tataaaatattgtaaggtagtacccattaaaagagaataccacctttagttgagagtgtcgtgcaaattcgtgtgttaacttgtcgtaccgtataacaac |
229544 |
T |
|
| Q |
181 |
tct |
183 |
Q |
| |
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||| |
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| T |
229545 |
tct |
229547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 106 - 183
Target Start/End: Complemental strand, 50525776 - 50525699
Alignment:
| Q |
106 |
attaaaagagaataccacctttagttgagagtgtcgtgcaaattcgtgtgttaacttgtcgtaccgtatagcaactct |
183 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
50525776 |
attaaaagagaataccacctttagttgagagtgtcgtgcaaattcgtgttttaacttgtcgtaccgtatagcaactct |
50525699 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 229077 - 229148
Alignment:
| Q |
9 |
agcagagaagaatgtatatcactgttttgcttctctagacgtttatataatagccaagtttatgttttatta |
80 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
229077 |
agcaaagaagaatgtatataactgttttgcttctctagacgtttatataatagccaagtttatgttttatta |
229148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 50525837 - 50525786
Alignment:
| Q |
9 |
agcagagaagaatgtatatcactgttttgcttctctagacgtttatataata |
60 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50525837 |
agcaaagaagaatgtatatcactgttttgcttctctagacgtttatataata |
50525786 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 47 - 183
Target Start/End: Original strand, 5590640 - 5590774
Alignment:
| Q |
47 |
acgtttatataatagccaagtttatgttttattatataaaatattgtaaggtagtacccattaaaagagaataccacctttagttgagagtgtcgtgcaa |
146 |
Q |
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||||||||||| || ||| | | ||||||||||||| |||||||||||||||| || ||||||||||||||||||| | | |||| |||||||||| |
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| T |
5590640 |
acgtttatatattaaccaggatgatgttttattata--aaatattgtaaggtagcactcattaaaagagaataccacatgaaattgaagttgtcgtgcaa |
5590737 |
T |
|
| Q |
147 |
attcgtgtgttaacttgtcgtaccgtatagcaactct |
183 |
Q |
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||||||||||| | ||||||||||||||||||||||| |
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| T |
5590738 |
attcgtgtgttgatttgtcgtaccgtatagcaactct |
5590774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 27405189 - 27405084
Alignment:
| Q |
16 |
aagaatgtatatcactgttttgcttctctagacgtttatataatagccaagtttatgttttattatataaaatattgtaaggtagtacccattaaaagag |
115 |
Q |
| |
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|||||||| |||||| |||| |||||||| ||||||||||| || ||| ||| ||||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
27405189 |
aagaatgtttatcaccgtttgccttctctaaacgtttatatattaaccatgttgatgttttattata--aaatattgtaaggtagcacccattaaaagag |
27405092 |
T |
|
| Q |
116 |
aataccac |
123 |
Q |
| |
|
|||||||| |
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|
| T |
27405091 |
aataccac |
27405084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 24672982 - 24672934
Alignment:
| Q |
204 |
attcttatgagcttagagttggcttcagtcggaataaagtatcaaggtt |
252 |
Q |
| |
|
|||||||||| ||||||||| |||||| | ||||| ||||||||||||| |
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| T |
24672982 |
attcttatgaccttagagttagcttcaattggaattaagtatcaaggtt |
24672934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 81 - 183
Target Start/End: Complemental strand, 38919666 - 38919564
Alignment:
| Q |
81 |
tataaaatattgtaaggtagtacccattaaaagagaataccacctttagttgagagtgtcgtgcaaattcgtgtgttaacttgtcgtaccgtatagcaac |
180 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||| | | |||| ||||||||||||| ||||||| |||||||||| ||||||||||| |
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| T |
38919666 |
tataaaatattgtaaggtaacactcattaaaagagaataccacatgaaattgaagttgtcgtgcaaatttgtgtgttgacttgtcgtatcgtatagcaac |
38919567 |
T |
|
| Q |
181 |
tct |
183 |
Q |
| |
|
||| |
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|
| T |
38919566 |
tct |
38919564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 155
Target Start/End: Original strand, 38130442 - 38130527
Alignment:
| Q |
68 |
ttatgttttattatataaaatattgtaaggtagtacccattaaaagagaataccacctttagttgagagtgtcgtgcaaattcgtgtg |
155 |
Q |
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||||||||||||||| ||||||| ||| |||| | |||||||||||||| ||| | ||||||| || ||||||||||||||||| |
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| T |
38130442 |
ttatgttttattata--aaatattataatgtagcaaccattaaaagagaaatccagttgtagttgaacgtatcgtgcaaattcgtgtg |
38130527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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