View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9963_low_22 (Length: 266)
Name: NF9963_low_22
Description: NF9963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9963_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 7 - 240
Target Start/End: Original strand, 30007147 - 30007380
Alignment:
| Q |
7 |
ggacgttggacaccagaagaggacagaatattggtgaatcacattaagaaacatggccatggaagttggagagcacttccaaagctagcaggattgaaca |
106 |
Q |
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| T |
30007147 |
ggaccttggacaccagaagaggacagaatattggtgaatcacattaagaaacatggccatggaagttggagagcacttccaaagctagcaggattgaaca |
30007246 |
T |
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| Q |
107 |
gatgtgggaaaagttgcagactaaggtggactaactatttaagacctgatatcaaaagaggacaattcacagatgaagaagagaaaacaatcatcaattt |
206 |
Q |
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| T |
30007247 |
gatgtgggaaaagttgcagactaaggtggactaactatttaagacctgatatcaaaagaggacaattcacagatgaagaagagaaaacaatcatcaattt |
30007346 |
T |
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| Q |
207 |
gcatgctgttcttgggaataagtaagtcattaat |
240 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
30007347 |
gcatgctgttcttgggaataagtaagtcattaat |
30007380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 1319472 - 1319259
Alignment:
| Q |
19 |
ccagaagaggacagaatattggtgaatcacattaagaaacatggccatggaagttggagagcacttccaaagctagcaggattgaacagatgtgggaaaa |
118 |
Q |
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| T |
1319472 |
ccagaagaagataaaatattagtggatcacattcagaaacatggccatggaagttggagagctcttccaaagcttgcaggattgaatagatgtggaaaga |
1319373 |
T |
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| Q |
119 |
gttgcagactaaggtggactaactatttaagacctgatatcaaaagaggacaattcacagatgaagaagagaaaacaatcatcaatttgcatgctgttct |
218 |
Q |
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| T |
1319372 |
gttgtagacttagatggaataattatctaaggcctgatattagaagaggaaaattctctgatgaagaagaaaatctcatcatcaatttacattcagttct |
1319273 |
T |
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| Q |
219 |
tgggaataagtaag |
232 |
Q |
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||| |||||||||| |
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| T |
1319272 |
tggaaataagtaag |
1319259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 232
Target Start/End: Original strand, 1281247 - 1281459
Alignment:
| Q |
20 |
cagaagaggacagaatattggtgaatcacattaagaaacatggccatggaagttggagagcacttccaaagctagcaggattgaacagatgtgggaaaag |
119 |
Q |
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|||||||||| | || ||| ||| |||||||| |||||||||| | |||| ||||||||| ||||||| || |||||||| ||||||||||| || || |
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| T |
1281247 |
cagaagaggataaaaaattagtggatcacattcagaaacatggtcctggacgttggagagatcttccaaggcgtgcaggattaaacagatgtggaaagag |
1281346 |
T |
|
| Q |
120 |
ttgcagactaaggtggactaactatttaagacctgatatcaaaagaggacaattcacagatgaagaagagaaaacaatcatcaatttgcatgctgttctt |
219 |
Q |
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| T |
1281347 |
ttgtaggttaagatggacaaattatttaagtcctgatattaaaagagggaaattttctgatgaagaagaggaactcatcatcaatttacattcagttctt |
1281446 |
T |
|
| Q |
220 |
gggaataagtaag |
232 |
Q |
| |
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| T |
1281447 |
ggaaataagtaag |
1281459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 55 - 188
Target Start/End: Original strand, 12551924 - 12552057
Alignment:
| Q |
55 |
aaacatggccatggaagttggagagcacttccaaagctagcaggattgaacagatgtgggaaaagttgcagactaaggtggactaactatttaagacctg |
154 |
Q |
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|||||||||||||||| |||| || ||||| |||| | || || ||||| || |||||||| ||||| || |||||||||| || ||||| || |||| |
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| T |
12551924 |
aaacatggccatggaaattggggaacactttcaaaacgtgctggtttgaataggtgtgggaagagttgtaggttaaggtggacaaattatttgaggcctg |
12552023 |
T |
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| Q |
155 |
atatcaaaagaggacaattcacagatgaagaaga |
188 |
Q |
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||||||| ||||| ||||||| ||||||||||| |
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| T |
12552024 |
atatcaagagagggaaattcactgatgaagaaga |
12552057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 109 - 189
Target Start/End: Complemental strand, 33732264 - 33732184
Alignment:
| Q |
109 |
tgtgggaaaagttgcagactaaggtggactaactatttaagacctgatatcaaaagaggacaattcacagatgaagaagag |
189 |
Q |
| |
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||||| ||||| |||||||| ||||||| ||||||||| ||||| ||||| || |||||| | |||||| ||||||||||| |
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| T |
33732264 |
tgtggaaaaagctgcagacttaggtggattaactatttgagaccagatattaagagaggaaatttcacaaatgaagaagag |
33732184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 203
Target Start/End: Complemental strand, 16138971 - 16138874
Alignment:
| Q |
106 |
agatgtgggaaaagttgcagactaaggtggactaactatttaagacctgatatcaaaagaggacaattcacagatgaagaagagaaaacaatcatcaa |
203 |
Q |
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|||||||| || ||||| ||| | || |||| ||||||||||| ||||||||| || |||||| | || ||| ||||||||||| |||| |||||||| |
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| T |
16138971 |
agatgtggaaagagttgtagattgagatggattaactatttaaaacctgatattaagagaggaaattttacaaatgaagaagaggaaactatcatcaa |
16138874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 33695180 - 33695229
Alignment:
| Q |
46 |
cacattaagaaacatggccatggaagttggagagcacttccaaagctagc |
95 |
Q |
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| T |
33695180 |
cacattcagcaacatggccatggaagttggagagcactccctaagctagc |
33695229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 13994133 - 13994081
Alignment:
| Q |
115 |
aaaagttgcagactaaggtggactaactatttaagacctgatatcaaaagagg |
167 |
Q |
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|||||||||||||| || |||||||| ||| | ||||||| |||||||||||| |
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| T |
13994133 |
aaaagttgcagacttagatggactaattatcttagacctggtatcaaaagagg |
13994081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 168
Target Start/End: Complemental strand, 48892676 - 48892614
Alignment:
| Q |
106 |
agatgtgggaaaagttgcagactaaggtggactaactatttaagacctgatatcaaaagagga |
168 |
Q |
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|||||||| ||||||||||||||||| |||| |||||| ||||||| ||||| || |||||| |
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| T |
48892676 |
agatgtggaaaaagttgcagactaagatggatgaactatctaagaccagatataaagagagga |
48892614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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