View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9963_low_23 (Length: 258)
Name: NF9963_low_23
Description: NF9963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9963_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 33180016 - 33180261
Alignment:
| Q |
1 |
tcacatctatattactattgttgttagtgaaatccaacatgtt---gttgttgttgaaacttgtcacacatgaattaagttcttcatttccatgtccata |
97 |
Q |
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| T |
33180016 |
tcacatctatattactattgttgttagtgaaatccaacatgttgttgttgttgttgaaacttgtcacacatgaattaagttcttcatttccatgtccata |
33180115 |
T |
|
| Q |
98 |
tgcatagctatttcctgagttttcttgtttaacatcaacaagagaagcatttggagcttgacttattagcatttgattttgaaattggttcataccaatc |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33180116 |
tgcatagctatttcctgagttttcttgtttaacatcaacaagagaagcatttggagcttgacttattagcatttgattttgaaattggttcataccaatc |
33180215 |
T |
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| Q |
198 |
ttatcttcctcccccacaattccaccccttcaa-ttagccaaaaac |
242 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33180216 |
ttatcttcctcccccacaattccaccccttcaatttagccaaaaac |
33180261 |
T |
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