View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9963_low_25 (Length: 246)

Name: NF9963_low_25
Description: NF9963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9963_low_25
NF9963_low_25
[»] chr8 (6 HSPs)
chr8 (36-228)||(43806068-43806260)
chr8 (40-109)||(14732883-14732952)
chr8 (39-88)||(31551847-31551896)
chr8 (51-97)||(7007917-7007963)
chr8 (51-88)||(29096956-29096993)
chr8 (52-88)||(24758532-24758568)
[»] chr2 (6 HSPs)
chr2 (27-88)||(35198243-35198304)
chr2 (51-94)||(14667666-14667709)
chr2 (49-97)||(32102863-32102911)
chr2 (47-88)||(8765413-8765454)
chr2 (51-87)||(39459794-39459830)
chr2 (28-88)||(42043209-42043269)
[»] chr7 (4 HSPs)
chr7 (47-87)||(40826521-40826561)
chr7 (26-88)||(18750861-18750923)
chr7 (26-87)||(12843047-12843108)
chr7 (28-92)||(31318700-31318765)
[»] chr6 (5 HSPs)
chr6 (51-94)||(34625744-34625787)
chr6 (51-94)||(34598548-34598591)
chr6 (52-85)||(10889461-10889494)
chr6 (47-88)||(32577476-32577517)
chr6 (61-93)||(4012740-4012772)
[»] chr5 (4 HSPs)
chr5 (48-93)||(28322248-28322293)
chr5 (51-93)||(11601687-11601729)
chr5 (48-90)||(19045565-19045607)
chr5 (60-92)||(12969538-12969570)
[»] chr4 (4 HSPs)
chr4 (51-94)||(2796556-2796599)
chr4 (52-88)||(7388438-7388474)
chr4 (48-88)||(10665008-10665048)
chr4 (48-88)||(10879153-10879193)
[»] chr1 (4 HSPs)
chr1 (51-106)||(3451865-3451920)
chr1 (58-87)||(16859119-16859148)
chr1 (51-88)||(26462657-26462694)
chr1 (47-87)||(1118409-1118449)
[»] chr3 (1 HSPs)
chr3 (18-88)||(49636838-49636908)


Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 36 - 228
Target Start/End: Complemental strand, 43806260 - 43806068
Alignment:
Q  36 acatcaatacaggtgataatttaagaaaatgaattaattgaatataatcacatatgttagtggcgtgtcggatatgtgtcagcaacaccgacatatattg 135  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43806260 acattaatataggtgataatttaagaaaatgaattaattgaatataatcacatatgttagtggcgtgtcggatatgtgtcagcaacaccgacatgtattg 43806161  T
Q  136 gacacaagacacaccttcaatcagcgtcggtgtccgggccttataataattaaattgcatgcatacctgaagatcaaaaactccaagaaaagg 228  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43806160 gacacaagacacaccttcaatcagcgtcggtgtccaggccttataataattaaattgcatgcatacctgaagatcaaaaactccaagaaaagg 43806068  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 109
Target Start/End: Original strand, 14732883 - 14732952
Alignment:
Q  40 caatacaggtgataatttaagaaaatgaattaattgaatataatcacatatgttagtggcgtgtcggata 109  Q
    |||||| |||||||||||||||||||||||||||| ||| |||| |||| |||||||| |||||| ||||    
T  14732883 caataccggtgataatttaagaaaatgaattaattaaatgtaataacatgtgttagtgtcgtgtcagata 14732952  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 31551896 - 31551847
Alignment:
Q  39 tcaatacaggtgataatttaagaaaatgaattaattgaatataatcacat 88  Q
    ||||||| ||| ||||||| ||||||||||| ||||||||||||||||||    
T  31551896 tcaataccggtaataatttgagaaaatgaataaattgaatataatcacat 31551847  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 97
Target Start/End: Complemental strand, 7007963 - 7007917
Alignment:
Q  51 ataatttaagaaaatgaattaattgaatataatcacatatgttagtg 97  Q
    |||||| ||||||||||||||||||||| ||||||| ||||| ||||    
T  7007963 ataattaaagaaaatgaattaattgaatgtaatcacgtatgtcagtg 7007917  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 29096956 - 29096993
Alignment:
Q  51 ataatttaagaaaatgaattaattgaatataatcacat 88  Q
    ||||||||||||||| |||||||||||| |||||||||    
T  29096956 ataatttaagaaaataaattaattgaatgtaatcacat 29096993  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 24758568 - 24758532
Alignment:
Q  52 taatttaagaaaatgaattaattgaatataatcacat 88  Q
    ||||||||||||||||  |||||||||||||||||||    
T  24758568 taatttaagaaaatgacataattgaatataatcacat 24758532  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 35198304 - 35198243
Alignment:
Q  27 gacactgacacatcaatacaggtgataatttaagaaaatgaattaattgaatataatcacat 88  Q
    |||||| ||||||| |||  ||| |||||||||||||||||||||||||||| |||||||||    
T  35198304 gacactaacacatcgatattggtcataatttaagaaaatgaattaattgaatgtaatcacat 35198243  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 94
Target Start/End: Original strand, 14667666 - 14667709
Alignment:
Q  51 ataatttaagaaaatgaattaattgaatataatcacatatgtta 94  Q
    ||||||| |||||||||| |||||||||||||||||||||||||    
T  14667666 ataatttgagaaaatgaactaattgaatataatcacatatgtta 14667709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 32102911 - 32102863
Alignment:
Q  49 tgataatttaagaaaatgaattaattgaatataatcacatatgttagtg 97  Q
    ||||||||| ||||||| |||||||||||||||||||||| ||| ||||    
T  32102911 tgataatttgagaaaataaattaattgaatataatcacatttgtcagtg 32102863  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 8765454 - 8765413
Alignment:
Q  47 ggtgataatttaagaaaatgaattaattgaatataatcacat 88  Q
    |||||||||||||||||| ||||||||||||| ||| |||||    
T  8765454 ggtgataatttaagaaaacgaattaattgaatgtaagcacat 8765413  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 39459794 - 39459830
Alignment:
Q  51 ataatttaagaaaatgaattaattgaatataatcaca 87  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  39459794 ataatttaaggaaatgaattaattgaatgtaatcaca 39459830  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 42043269 - 42043209
Alignment:
Q  28 acactgacacatcaatacaggtgataatttaagaaaatgaattaattgaatataatcacat 88  Q
    |||| |||||||||| || | | ||||||||| |||||||||||||||||| |||| ||||    
T  42043269 acacggacacatcaacaccgataataatttaataaaatgaattaattgaatgtaataacat 42043209  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 40826521 - 40826561
Alignment:
Q  47 ggtgataatttaagaaaatgaattaattgaatataatcaca 87  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  40826521 ggtgataatttgagaaaatgaattaattgaatataatcaca 40826561  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 18750861 - 18750923
Alignment:
Q  26 cgacactgacacatcaatacaggtgataatttaagaaaatgaattaattgaatataatcacat 88  Q
    ||||||||||||||| | |  ||| |||||||||||||||||  ||||||||| |||||||||    
T  18750861 cgacactgacacatcgacaacggtaataatttaagaaaatgacataattgaatgtaatcacat 18750923  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 12843108 - 12843047
Alignment:
Q  26 cgacactgacacatcaatacaggtgataatttaagaaaatgaattaattgaatataatcaca 87  Q
    |||||||||||| |||| || |||  |||||| |||||||||  ||||||||||||||||||    
T  12843108 cgacactgacacgtcaagaccggtattaatttgagaaaatgacataattgaatataatcaca 12843047  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 31318700 - 31318765
Alignment:
Q  28 acactgacacatcaatacaggtgataatttaagaaaatgaat-taattgaatataatcacatatgt 92  Q
    ||||||||||||| | || | || |||||||||||||  ||| |||||||||||||||||||||||    
T  31318700 acactgacacatcgacaccgatggtaatttaagaaaaataatgtaattgaatataatcacatatgt 31318765  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 94
Target Start/End: Original strand, 34625744 - 34625787
Alignment:
Q  51 ataatttaagaaaatgaattaattgaatataatcacatatgtta 94  Q
    ||||||| |||||||||||||||||||| |||||||||||||||    
T  34625744 ataatttgagaaaatgaattaattgaatgtaatcacatatgtta 34625787  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 94
Target Start/End: Original strand, 34598548 - 34598591
Alignment:
Q  51 ataatttaagaaaatgaattaattgaatataatcacatatgtta 94  Q
    ||||||| ||||||||||||||||| || |||||||||||||||    
T  34598548 ataatttgagaaaatgaattaattggatgtaatcacatatgtta 34598591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 85
Target Start/End: Complemental strand, 10889494 - 10889461
Alignment:
Q  52 taatttaagaaaatgaattaattgaatataatca 85  Q
    |||||||||||||| |||||||||||||||||||    
T  10889494 taatttaagaaaataaattaattgaatataatca 10889461  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 32577517 - 32577476
Alignment:
Q  47 ggtgataatttaagaaaatgaattaattgaatataatcacat 88  Q
    |||||| |||| |||||||||||||||||||| |||||||||    
T  32577517 ggtgatgatttgagaaaatgaattaattgaatgtaatcacat 32577476  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 93
Target Start/End: Original strand, 4012740 - 4012772
Alignment:
Q  61 aaaatgaattaattgaatataatcacatatgtt 93  Q
    |||||||||||||||||||||||||||| ||||    
T  4012740 aaaatgaattaattgaatataatcacatgtgtt 4012772  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 28322248 - 28322293
Alignment:
Q  48 gtgataatttaagaaaatgaattaattgaatataatcacatatgtt 93  Q
    |||||||||| |||||||||||||||||||| ||||||||| ||||    
T  28322248 gtgataatttgagaaaatgaattaattgaatgtaatcacatgtgtt 28322293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 93
Target Start/End: Original strand, 11601687 - 11601729
Alignment:
Q  51 ataatttaagaaaatgaattaattgaatataatcacatatgtt 93  Q
    ||||||||||||| | |||||||||||| ||||||||||||||    
T  11601687 ataatttaagaaactaaattaattgaatgtaatcacatatgtt 11601729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 19045565 - 19045607
Alignment:
Q  48 gtgataatttaagaaaatgaattaattgaatataatcacatat 90  Q
    |||||||||||| |||||||||||||| ||| |||||||||||    
T  19045565 gtgataatttaaaaaaatgaattaattaaatgtaatcacatat 19045607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 92
Target Start/End: Original strand, 12969538 - 12969570
Alignment:
Q  60 gaaaatgaattaattgaatataatcacatatgt 92  Q
    ||||||||||||||||||| |||||||||||||    
T  12969538 gaaaatgaattaattgaatgtaatcacatatgt 12969570  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 94
Target Start/End: Original strand, 2796556 - 2796599
Alignment:
Q  51 ataatttaagaaaatgaattaattgaatataatcacatatgtta 94  Q
    ||||||| |||||||||||||||||||| ||||||||| |||||    
T  2796556 ataatttgagaaaatgaattaattgaatttaatcacatgtgtta 2796599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 7388474 - 7388438
Alignment:
Q  52 taatttaagaaaatgaattaattgaatataatcacat 88  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  7388474 taattttagaaaataaattaattgaatataatcacat 7388438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 10665048 - 10665008
Alignment:
Q  48 gtgataatttaagaaaatgaattaattgaatataatcacat 88  Q
    |||||||||||| ||||| || |||||||||||||||||||    
T  10665048 gtgataatttaaaaaaataaagtaattgaatataatcacat 10665008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 10879193 - 10879153
Alignment:
Q  48 gtgataatttaagaaaatgaattaattgaatataatcacat 88  Q
    |||||||||||| ||||| || |||||||||||||||||||    
T  10879193 gtgataatttaaaaaaataaagtaattgaatataatcacat 10879153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 106
Target Start/End: Original strand, 3451865 - 3451920
Alignment:
Q  51 ataatttaagaaaatgaattaattgaatataatcacatatgttagtggcgtgtcgg 106  Q
    ||||||| |||||| ||||||||||||| ||||||||| |||| ||| ||||||||    
T  3451865 ataatttgagaaaacgaattaattgaatttaatcacatgtgttggtgtcgtgtcgg 3451920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 87
Target Start/End: Original strand, 16859119 - 16859148
Alignment:
Q  58 aagaaaatgaattaattgaatataatcaca 87  Q
    ||||||||||||||||||||||||||||||    
T  16859119 aagaaaatgaattaattgaatataatcaca 16859148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 88
Target Start/End: Complemental strand, 26462694 - 26462657
Alignment:
Q  51 ataatttaagaaaatgaattaattgaatataatcacat 88  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  26462694 ataatttaagaaaatgaaataattgaatgtaatcacat 26462657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 1118449 - 1118409
Alignment:
Q  47 ggtgataatttaagaaaatgaattaattgaatataatcaca 87  Q
    ||||||||||| | |||||||||||||||||| ||||||||    
T  1118449 ggtgataatttgaaaaaatgaattaattgaatgtaatcaca 1118409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 49636908 - 49636838
Alignment:
Q  18 atcagactcgacactgacacatcaatacaggtgataatttaagaaaatgaattaattgaatataatcacat 88  Q
    ||||||| | ||||||||| ||| |  | ||| ||||||| |||||||||||||||||||| |||||||||    
T  49636908 atcagacacaacactgacagatcgactctggtaataatttgagaaaatgaattaattgaatgtaatcacat 49636838  T

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