View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9963_low_26 (Length: 218)

Name: NF9963_low_26

Description: NF9963

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF9963_low_26

[»] chr8 (3 HSPs)

Target: chr8 (Bit Score: 84; Significance: 4e-40; HSPs: 3)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 84; E-Value: 4e-40

Query Start/End: Original strand, 115 - 198

Target Start/End: Original strand, 31909589 - 31909672

Alignment:

Q	115	ctaaagtcagaattataatagtttttccttcaaatttgatgcttaggtgctaaagtttgtatgattctagaccttcttggcgat	198	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	31909589	ctaaagtcagaattataatagtttttccttcaaatttgatgcttaggtgctaaagtttgtatgattctagaccttcttggcgat	31909672	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2

Raw Score: 36; E-Value: 0.00000000002

Query Start/End: Original strand, 19 - 54

Target Start/End: Original strand, 31909493 - 31909528

Alignment:

Q	19	agaacatgtgtaagacttagaatttgaaatgagaat	54	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	31909493	agaacatgtgtaagacttagaatttgaaatgagaat	31909528	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3

Raw Score: 32; E-Value: 0.000000005

Query Start/End: Original strand, 115 - 194

Target Start/End: Original strand, 31900902 - 31900980

Alignment:

Q	115	ctaaagtcagaattataatagtttttccttcaaatttgatgcttaggtgctaaagtttgtatgattctagaccttcttgg	194	Q
		\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|
T	31900902	ctaaagtcatgattataat-gattttccttcaaatgcgatgtctaggtgctaaactttgtatgatgcttgaccttcttgg	31900980	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]