View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9963_low_3 (Length: 618)
Name: NF9963_low_3
Description: NF9963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9963_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 465; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 115 - 600
Target Start/End: Original strand, 31909589 - 31910070
Alignment:
| Q |
115 |
ctaaagtcagaattataatagtttttccttcaaatttgatgcttaggtgctaaagtttgtatgattctagaccttcttggcgatttgggctctgtaactg |
214 |
Q |
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| T |
31909589 |
ctaaagtcagaattataatagtttttccttcaaatttgatgcttaggtgctaaagtttgtatgattctagaccttcttggcgatttgggctctgtaactg |
31909688 |
T |
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| Q |
215 |
gagttgatgctgcaaggcatcggttggcagtatgtataacaattctgcagaaatataaagccggctttttgctgccgatggaacaatattattggttatt |
314 |
Q |
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| T |
31909689 |
gagttgatgctgcaaggcatcggttggcagtatgtataacaattctgcagaaatataaagccggctttttgctgccgatggaacaatattattggttatt |
31909788 |
T |
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| Q |
315 |
ttcggggggtttcgttctgattttgaatcatgtaagtgaggtttaggtcgtggcattgttaataattattagccatttttgaaacgttttcattctatca |
414 |
Q |
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| T |
31909789 |
ttcggggggtttcgttctgattttgaatcatgtaagtgaggtttaggtcgtggcattgttaataattattagccatttttgaaacgttttcattctatca |
31909888 |
T |
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| Q |
415 |
agtattaaacaggcgggcgagtctagattgaaagaaaaaatggatgtgttcaaagagtggacatctagatgaccatggaaagagaggaaaagaacaaagg |
514 |
Q |
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| T |
31909889 |
agtattaaaca----ggcgagtctagattgaaagaaaaaatggatgtgttcaaagagtggacatctagatgaccatggaaagagaggaaaagaacaaagg |
31909984 |
T |
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| Q |
515 |
agtgtggcactccacaagtggtgtctagaattatgcaagactgtatctgaaaatgagactgaactttactttgaattcatcttgca |
600 |
Q |
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| T |
31909985 |
agtgtggcactccacaagtggtgtctagaattatgcaagactgtatctgaaaatgagactgaacttcactttgaattcatcttgca |
31910070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 370 - 541
Target Start/End: Original strand, 31901220 - 31901387
Alignment:
| Q |
370 |
ttgttaataattattagccatttttgaaacgttttcattctatcaagtattaaacaggcgggcgagtctagattgaaagaaaaaatggatgtgttcaaag |
469 |
Q |
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| T |
31901220 |
ttgttaataattattagccttttttgaaatgttttcattctatcaagtattaagcaggtg----agtctagattggaagaaagaatggatgtgttcaagg |
31901315 |
T |
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| Q |
470 |
agtggacatctagatgaccatggaaagagaggaaaagaacaaaggagtgtggcactccacaagtggtgtcta |
541 |
Q |
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| T |
31901316 |
agtggacatctagaagaccatggaaagagaggaaaagaacaaagaagtgtggcactccacaagtggtgtcta |
31901387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 115 - 273
Target Start/End: Original strand, 31900902 - 31901059
Alignment:
| Q |
115 |
ctaaagtcagaattataatagtttttccttcaaatttgatgcttaggtgctaaagtttgtatgattctagaccttcttggcgatttgggctctgtaactg |
214 |
Q |
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| T |
31900902 |
ctaaagtcatgattataat-gattttccttcaaatgcgatgtctaggtgctaaactttgtatgatgcttgaccttcttggtgattcgggctctgtaactg |
31901000 |
T |
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| Q |
215 |
gagttgatgctgcaaggcatcggttggcagtatgtataacaattctgcagaaatataaa |
273 |
Q |
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| T |
31901001 |
gagttgatgctgcaaggcatcggttggcagcctgtagaacaatgctgcagaaatataaa |
31901059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 31909493 - 31909528
Alignment:
| Q |
19 |
agaacatgtgtaagacttagaatttgaaatgagaat |
54 |
Q |
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| T |
31909493 |
agaacatgtgtaagacttagaatttgaaatgagaat |
31909528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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