View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9963_low_6 (Length: 476)

Name: NF9963_low_6
Description: NF9963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9963_low_6
NF9963_low_6
[»] chr1 (6 HSPs)
chr1 (18-212)||(44387472-44387668)
chr1 (17-212)||(9932096-9932294)
chr1 (21-212)||(45029884-45030078)
chr1 (21-212)||(45034735-45034929)
chr1 (21-212)||(24210107-24210301)
chr1 (111-200)||(19330210-19330299)
[»] chr3 (5 HSPs)
chr3 (17-212)||(48099378-48099576)
chr3 (18-249)||(20620563-20620792)
chr3 (18-244)||(24647168-24647390)
chr3 (18-249)||(24638234-24638461)
chr3 (25-208)||(29074034-29074220)
[»] chr8 (6 HSPs)
chr8 (19-212)||(23584121-23584317)
chr8 (352-462)||(11781265-11781375)
chr8 (20-212)||(40270352-40270547)
chr8 (111-211)||(19183593-19183693)
chr8 (21-212)||(31343166-31343360)
chr8 (285-321)||(15935196-15935232)
[»] chr6 (5 HSPs)
chr6 (17-212)||(16594756-16594954)
chr6 (17-212)||(22207601-22207801)
chr6 (21-212)||(33166125-33166319)
chr6 (18-264)||(21875289-21875532)
chr6 (242-316)||(21875203-21875279)
[»] scaffold0134 (1 HSPs)
scaffold0134 (21-212)||(40911-41105)
[»] chr7 (1 HSPs)
chr7 (227-342)||(4701754-4701869)
[»] scaffold0655 (1 HSPs)
scaffold0655 (24-208)||(5634-5821)
[»] scaffold0009 (1 HSPs)
scaffold0009 (21-212)||(31993-32187)
[»] chr2 (4 HSPs)
chr2 (18-211)||(10260431-10260627)
chr2 (18-212)||(10260737-10260934)
chr2 (21-200)||(40623188-40623370)
chr2 (24-195)||(1586196-1586369)
[»] scaffold0936 (1 HSPs)
scaffold0936 (114-200)||(3561-3647)
[»] chr5 (1 HSPs)
chr5 (21-212)||(1545864-1546060)


Alignment Details
Target: chr1 (Bit Score: 120; Significance: 3e-61; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 44387472 - 44387668
Alignment:
Q  18 actaaacatattgagatggacattcactttgttcgataaaaggtcgcgtgtggccagacacgcgtccttcatgttccttctcgtcatcaaattg---aca 114  Q
    |||||||||||||||||||||||||||||||||||  ||||||||| | |||||||| |||| |||||||||||||||||||||||||| ||||   |||    
T  44387472 actaaacatattgagatggacattcactttgttcgg-aaaaggtcgtgcgtggccaggcacgtgtccttcatgttccttctcgtcatcagattgctcaca 44387570  T
Q  115 tcttcaccaaaggtctacctcgagttctttttgatgatttctggaccagtctaagcgtccgtgaatctcccgcttcgactgcgggggtctgatagaat 212  Q
    ||||||||||||  ||||||||||||||||||||||||||| | ||||||||||||| | ||||| |||||||||||||||||||||| |||||||||    
T  44387571 tcttcaccaaagtcctacctcgagttctttttgatgatttccgaaccagtctaagcgcctgtgaacctcccgcttcgactgcgggggtgtgatagaat 44387668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 17 - 212
Target Start/End: Complemental strand, 9932294 - 9932096
Alignment:
Q  17 cactaaacatattgagatggacattcactttgttcgataaaaggtcgcgtgtggccagacacgcgtccttcatgttccttctcgtcatcaaat---tgac 113  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||  |||||||| |||||||||||||||||||||||||||| || ||   ||||    
T  9932294 cactaaacatattgagatggacattcactttgttcgagaaaaggtagctcgtggccaggcacgcgtccttcatgttccttctcgtcaccagattgctgac 9932195  T
Q  114 atcttcaccaaaggtctacctcgagttctttttgatgatttctggaccagtctaagcgtccgtgaatctcccgcttcgactgcgggggtctgatagaat 212  Q
    |||||||||||||| ||||| || |||||||||||||||||  | ||||||||||| || |||||| |||||||||||||||||||||| |||||||||    
T  9932194 atcttcaccaaaggcctaccgcgtgttctttttgatgattttcgaaccagtctaagtgttcgtgaacctcccgcttcgactgcgggggtgtgatagaat 9932096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 21 - 212
Target Start/End: Original strand, 45029884 - 45030078
Alignment:
Q  21 aaacatattgagatggacattcactttgttcgataaaaggtcgcgtgtggccagacacgcgtccttcatgttccttctcgtcatcaaattg---acatct 117  Q
    ||||| ||||| |||||||| |||||||| ||  |||| || ||  |||| ||| |||||||||| |||||||| ||||| ||||| ||||   | ||||    
T  45029884 aaacacattgaaatggacatacactttgtacgggaaaaagtagctcgtggtcaggcacgcgtcctccatgttccatctcgacatcagattgcagatatct 45029983  T
Q  118 tcaccaaaggtctacctcgagttctttttgatgatttctggaccagtctaagcgtccgtgaatctcccgcttcgactgcgggggtctgatagaat 212  Q
    |||||||||| || |||||  |||| |||||||||||  |||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||    
T  45029984 tcaccaaagggcttcctcgcattctctttgatgattttcggaccagtctcagcgtccgtgaacctcccgcttcgactgtgggggtctgatagaat 45030078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 21 - 212
Target Start/End: Original strand, 45034735 - 45034929
Alignment:
Q  21 aaacatattgagatggacattcactttgttcgataaaaggtcgcgtgtggccagacacgcgtccttcatgttccttctcgtcatcaaattg---acatct 117  Q
    ||||| ||||| |||||||| |||||||| ||  |||| || ||  |||| ||| |||||||||| |||||||| ||||| ||||| ||||   | ||||    
T  45034735 aaacacattgaaatggacatacactttgtacgggaaaaagtagctcgtggtcaggcacgcgtcctccatgttccatctcgacatcagattgcagatatct 45034834  T
Q  118 tcaccaaaggtctacctcgagttctttttgatgatttctggaccagtctaagcgtccgtgaatctcccgcttcgactgcgggggtctgatagaat 212  Q
    |||||||||| || |||||  |||| |||||||||||  |||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||    
T  45034835 tcaccaaagggcttcctcgcattctctttgatgattttcggaccagtctcagcgtccgtgaacctcccgcttcgactgtgggggtctgatagaat 45034929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 21 - 212
Target Start/End: Original strand, 24210107 - 24210301
Alignment:
Q  21 aaacatattgagatggacattcactttgttcgataaaaggtcgcgtgtggccagacacgcgtccttcatgttccttctcgtcatcaaattg---acatct 117  Q
    ||||| ||||| |||||||| |||||||| ||  |||| || || ||||| ||| |||||||||| |||||||| ||||| ||||  ||||   | ||||    
T  24210107 aaacacattgaaatggacatacactttgtacgggaaaaagtagcttgtggtcagccacgcgtcctccatgttccatctcgacatcggattgcagatatct 24210206  T
Q  118 tcaccaaaggtctacctcgagttctttttgatgatttctggaccagtctaagcgtccgtgaatctcccgcttcgactgcgggggtctgatagaat 212  Q
    |||||||||| || || ||  |||| |||||||||||  |||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||    
T  24210207 tcaccaaagggcttccccgcattctctttgatgattttcggaccagtcttagcgtccgtgaacctcccgcttcgactgcgggagtctgatagaat 24210301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 111 - 200
Target Start/End: Original strand, 19330210 - 19330299
Alignment:
Q  111 gacatcttcaccaaaggtctacctcgagttctttttgatgatttctggaccagtctaagcgtccgtgaatctcccgcttcgactgcgggg 200  Q
    ||||||||||||||||| || ||||   |||| |||||||||||||||||| ||| |||||| ||||||  ||||| |||||||||||||    
T  19330210 gacatcttcaccaaagggcttcctcatattctctttgatgatttctggaccggtcaaagcgttcgtgaacttcccgtttcgactgcgggg 19330299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 17 - 212
Target Start/End: Complemental strand, 48099576 - 48099378
Alignment:
Q  17 cactaaacatattgagatggacattcactttgttcgataaaaggtcgcgtgtggccagacacgcgtccttcatgttccttctcgtcatcaaat---tgac 113  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||  |||||||| |||||||||||||||||||||||||||| || ||   ||||    
T  48099576 cactaaacatattgagatggacattcactttgttcgagaaaaggtagctcgtggccaggcacgcgtccttcatgttccttctcgtcaccagattgctgac 48099477  T
Q  114 atcttcaccaaaggtctacctcgagttctttttgatgatttctggaccagtctaagcgtccgtgaatctcccgcttcgactgcgggggtctgatagaat 212  Q
    |||||||||||||| ||||| || |||||||||||||||||  | ||||||||||| || |||||| |||||||||||||||||||||| |||||||||    
T  48099476 atcttcaccaaaggcctaccgcgtgttctttttgatgattttcgaaccagtctaagtgttcgtgaacctcccgcttcgactgcgggggtgtgatagaat 48099378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 20620563 - 20620792
Alignment:
Q  18 actaaacatattgagatggacattcactttgttcgataaaaggtcgcgtgtggccagacacgcgtccttcatgttccttctcgtcatcaaattg---aca 114  Q
    |||||||||||||||||||||||||  |||||| || |||||| || | ||| | || ||||||||||||||||||||||||||||||| ||||   |||    
T  20620563 actaaacatattgagatggacattctatttgtttgagaaaaggccgtgggtgacaaggcacgcgtccttcatgttccttctcgtcatcagattgctgaca 20620662  T
Q  115 tcttcaccaaaggtctacctcgagttctttttgatgatttctggaccagtctaagcgtccgtgaatctcccgcttcgactgcgggggtctgatagaatgt 214  Q
    ||||||||||||| | ||||||||||||||||||| ||||  | |||||| ||||||| |||||| |||||||||||||| ||| ||| |||||||||||    
T  20620663 tcttcaccaaaggccaacctcgagttctttttgataattttcgaaccagtttaagcgttcgtgaacctcccgcttcgacttcggaggtatgatagaatgt 20620762  T
Q  215 ttgacatttgactatgtaattatgttagtaattat 249  Q
    ||||| |     |||||||||||||||||||||||    
T  20620763 ttgactt-----tatgtaattatgttagtaattat 20620792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 24647390 - 24647168
Alignment:
Q  18 actaaacatattgagatggacattcactttgttcgataaaaggtcgcgtgtggccagacacgcgtccttcatgttccttctcgtcatcaaat---tgaca 114  Q
    |||||||||||||||||||| |||||||||||||   ||||||||  | |||| ||| || | ||||||||||||||||||||||| || ||   |||||    
T  24647390 actaaacatattgagatggatattcactttgttctggaaaaggtcatgcgtggtcaggcatgtgtccttcatgttccttctcgtcaccagattgctgaca 24647291  T
Q  115 tcttcaccaaaggtctacctcgagttctttttgatgatttctggaccagtctaagcgtccgtgaatctcccgcttcgactgcgggggtctgatagaatgt 214  Q
    |||||| |||||| |||| | |||||||||||||||||||   ||||| ||||||||||||| || |||||||||| ||||| ||||| |||||||||||    
T  24647290 tcttca-caaaggcctactttgagttctttttgatgattttcagaccattctaagcgtccgtaaacctcccgcttcaactgc-ggggtgtgatagaatgt 24647193  T
Q  215 ttgacatttgactatgtaattatgttagta 244  Q
    ||||| |     ||||||||||||||||||    
T  24647192 ttgactt-----tatgtaattatgttagta 24647168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 24638461 - 24638234
Alignment:
Q  18 actaaacatattgagatggacattcactttgttcgataaaaggtcgcgtgtggccagacacgcgtccttcatgttccttctcgtcatcaaat---tgaca 114  Q
    |||||||||||||||||||| |||||||||||||   ||||||||  | |||| ||| || | ||||||||||||||||||||||| || ||   |||||    
T  24638461 actaaacatattgagatggatattcactttgttctggaaaaggtcatgcgtggtcaggcatgtgtccttcatgttccttctcgtcaccagattgctgaca 24638362  T
Q  115 tcttcaccaaaggtctacctcgagttctttttgatgatttctggaccagtctaagcgtccgtgaatctcccgcttcgactgcgggggtctgatagaatgt 214  Q
    || ||| |||||| |||| | |||||| ||||||||||||   ||||| ||||||||||||| || |||||||||| ||||| ||||| |||||||||||    
T  24638361 tcatca-caaaggcctactttgagttcattttgatgattttcagaccattctaagcgtccgtaaacctcccgcttcaactgc-ggggtgtgatagaatgt 24638264  T
Q  215 ttgacatttgactatgtaattatgttagtaattat 249  Q
    ||||| |     |||||||||||||||||| ||||    
T  24638263 ttgactt-----tatgtaattatgttagtagttat 24638234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 25 - 208
Target Start/End: Complemental strand, 29074220 - 29074034
Alignment:
Q  25 atattgagatggacattcactttgttcgataaaaggtcgcgtgtggccagacacgcgtccttcatgttccttctcgtcatcaaatt---gacatcttcac 121  Q
    |||||| |||||| ||||||||||| ||  |||| || ||  |||| ||| || || | ||||||||||||||||| |||||||||   || ||||||||    
T  29074220 atattgtgatggagattcactttgtacgggaaaaagtagctcgtggtcaggcatgcatacttcatgttccttctcgacatcaaattacagatatcttcac 29074121  T
Q  122 caaaggtctacctcgagttctttttgatgatttctggaccagtctaagcgtccgtgaatctcccgcttcgactgcgggggtctgata 208  Q
    |||||| || |||||  |||| |||||||||||  ||| ||||||||||||| |  || |||||||||||||||||| ||| |||||    
T  29074120 caaagggcttcctcgcattctctttgatgattttcggatcagtctaagcgtctggaaacctcccgcttcgactgcggcggtttgata 29074034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 8e-56; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 23584121 - 23584317
Alignment:
Q  19 ctaaacatattgagatggacattcactttgttcgataaaaggtcgcgtgtggccagacacgcgtccttcatgttccttctcgtcatcaaat---tgacat 115  Q
    |||||||||||||||||||||||||||||||||||  |||||||||  |||||||| |||||||||||||||||||||||||||| || ||   || | |    
T  23584121 ctaaacatattgagatggacattcactttgttcgaggaaaggtcgctcgtggccaggcacgcgtccttcatgttccttctcgtcaccagattgctgtcgt 23584220  T
Q  116 cttcaccaaaggtctacctcgagttctttttgatgatttctggaccagtctaagcgtccgtgaatctcccgcttcgactgcgggggtctgatagaat 212  Q
    ||||||||||||||||||||| ||||||||||||||||||  || |||||||| |||||||||| ||||||||||||||| |||||| | |||||||    
T  23584221 cttcaccaaaggtctacctcgtgttctttttgatgatttccagatcagtctaaacgtccgtgaacctcccgcttcgactgagggggtgtaatagaat 23584317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 352 - 462
Target Start/End: Complemental strand, 11781375 - 11781265
Alignment:
Q  352 aataatatattgaataagggcagaggatggggtatcagttaaatgccaacctcgttagaatatttcagactctctgaaaaaccaaaattgtgtcatgtcc 451  Q
    |||||||||||||||||| | |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11781375 aataatatattgaataagagaagagtatggggtatcagttagatgccaacctcgttagaatatttcagactctctgaaaaaccaaaattgtgtcatgtcc 11781276  T
Q  452 ccgtccctttg 462  Q
    | |||| ||||    
T  11781275 cagtccttttg 11781265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 40270547 - 40270352
Alignment:
Q  20 taaacatattgagatggacattcactttgttcgataaaaggtcgcgtgtggccagacacgcgtccttcatgttccttctcgtcatcaaat---tgacatc 116  Q
    |||||||||||||||| ||||||| ||||||||  ||||||||||  |||| ||| | ||||||||||||||||| ||  | ||||| ||   |||||||    
T  40270547 taaacatattgagatgaacattcattttgttcgggaaaaggtcgctcgtggtcaggctcgcgtccttcatgttccctcaagacatcagatcgctgacatc 40270448  T
Q  117 ttcaccaaaggtctacctcgagttctttttgatgatttctggaccagtctaagcgtccgtgaatctcccgcttcgactgcgggggtctgatagaat 212  Q
    ||||||||||| || |||||  |||| |||||||||||  |||||||||| |||||||||||| |||||||||||||||||||||| |||||||||    
T  40270447 ttcaccaaaggacttcctcgcattctctttgatgattttcggaccagtcttagcgtccgtgaacctcccgcttcgactgcgggggtgtgatagaat 40270352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 111 - 211
Target Start/End: Original strand, 19183593 - 19183693
Alignment:
Q  111 gacatcttcaccaaaggtctacctcgagttctttttgatgatttctggaccagtctaagcgtccgtgaatctcccgcttcgactgcgggggtctgataga 210  Q
    ||||||||||||||||| || |||||  |||| |||||||||||  ||||||||||||||||  ||||| |||||||||||||||||||||| |||||||    
T  19183593 gacatcttcaccaaagggcttcctcgtattctctttgatgattttcggaccagtctaagcgtttgtgaacctcccgcttcgactgcgggggtgtgataga 19183692  T
Q  211 a 211  Q
    |    
T  19183693 a 19183693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 212
Target Start/End: Original strand, 31343166 - 31343360
Alignment:
Q  21 aaacatattgagatggacattcactttgttcgataaaaggtcgcgtgtggccagacacgcgtccttcatgttccttctcgtcatcaaattg---acatct 117  Q
    ||||||||||||||||||||||| ||||||||  |||| || ||  |||| ||  || | || ||||||||||| ||  |  |||| ||||   ||||||    
T  31343166 aaacatattgagatggacattcattttgttcgggaaaaagtagctcgtggtcaagcatgtgtacttcatgttccctccagatatcagattgcagacatct 31343265  T
Q  118 tcaccaaaggtctacctcgagttctttttgatgatttctggaccagtctaagcgtccgtgaatctcccgcttcgactgcgggggtctgatagaat 212  Q
    |||||||||| || ||||   |||||||| |||| ||   ||| ||| |||||||| ||||| |||| |||||||||||| |||| |||||||||    
T  31343266 tcaccaaagggctccctcatattcttttttatgactttcagactagtgtaagcgtctgtgaacctcctgcttcgactgcgagggtgtgatagaat 31343360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 285 - 321
Target Start/End: Complemental strand, 15935232 - 15935196
Alignment:
Q  285 tgtaactatatatacttttgatcattatcaatgaaag 321  Q
    |||||||||||||||| ||||||||||||||||||||    
T  15935232 tgtaactatatatactcttgatcattatcaatgaaag 15935196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 4e-45; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 16594756 - 16594954
Alignment:
Q  17 cactaaacatattgagatggacattcactttgttcgataaaaggtcgcgtgtggccagacacgcgtccttcatgttccttctcgtcatcaaattg---ac 113  Q
    |||||| |||||||||||||||||||| ||||||||  ||||||||||  |||||||| | ||||||||||||||||| ||| | ||||||||||   ||    
T  16594756 cactaagcatattgagatggacattcattttgttcgggaaaaggtcgctcgtggccaggctcgcgtccttcatgttccctctagacatcaaattgcagac 16594855  T
Q  114 atcttcaccaaaggtctacctcgagttctttttgatgatttctggaccagtctaagcgtccgtgaatctcccgcttcgactgcgggggtctgatagaat 212  Q
    |||||||||||||| || |||||  |||| |||||||||||  |||| |||||||| ||||||||| ||||||||||||||||| |||| |||||||||    
T  16594856 atcttcaccaaaggacttcctcgcattctctttgatgattttcggactagtctaagtgtccgtgaacctcccgcttcgactgcgagggtgtgatagaat 16594954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 17 - 212
Target Start/End: Complemental strand, 22207801 - 22207601
Alignment:
Q  17 cactaaacatattgagatggacattcactttgttcgataaaaggtcgcgtgtggccagacacgcgtccttcatgttcct--tctcgtca-tcaaat--tg 111  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||  |||||||| ||| | ||||||||||||||  |||||||| |  |||  ||    
T  22207801 cactaaacatgttgagatggacattcactttgttcgagaaaaggtcgctcgtggccaggcacacatccttcatgttccttctctcgtcactagaatgctg 22207702  T
Q  112 acatcttcaccaaaggtctacctcgagttctttttgatgatttctggaccagtctaagcgtccgtgaatctcccgcttcgactgcgggggtctgatagaa 211  Q
    || |||||||||||   |||||||| ||| |||| |||||||||  ||||||||||| |||  ||||| |||||||||||||| || |||| ||||||||    
T  22207701 acgtcttcaccaaaaacctacctcgtgtttttttcgatgatttccagaccagtctaaacgtttgtgaacctcccgcttcgactacgagggtgtgatagaa 22207602  T
Q  212 t 212  Q
    |    
T  22207601 t 22207601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 21 - 212
Target Start/End: Original strand, 33166125 - 33166319
Alignment:
Q  21 aaacatattgagatggacattcactttgttcgataaaaggtcgcgtgtggccagacacgcgtccttcatgttccttctcgtcatcaaattg---acatct 117  Q
    ||||| ||||| |||||||| |||||||| ||  |||| || ||  |||| ||| |||| ||||| |||||||| ||||| ||||| ||||   | ||||    
T  33166125 aaacacattgaaatggacatacactttgtacgggaaaaagtagctcgtggtcaggcacgtgtcctccatgttccatctcgacatcagattgcagatatct 33166224  T
Q  118 tcaccaaaggtctacctcgagttctttttgatgatttctggaccagtctaagcgtccgtgaatctcccgcttcgactgcgggggtctgatagaat 212  Q
    |||||||||| || || ||  |||| |||||||||||  |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  33166225 tcaccaaagggcttccccgcattctctttgatgattttcggaccagtctcagcgtccgtgaacctcccgcttcgactgcgggggtctgatagaat 33166319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 18 - 264
Target Start/End: Complemental strand, 21875532 - 21875289
Alignment:
Q  18 actaaacatattgagatggacattcactttgttcgataaaaggtcgcgtgtggccagacacgcgtccttcatgttccttctcgtcatcaaatt---gaca 114  Q
    |||||||| ||||| || | |||||||||||||  | ||| |||||| ||||||| |||| || ||| ||| |||||||||| |||||  |||   ||||    
T  21875532 actaaacaaattgatataggcattcactttgtttcaaaaatggtcgcatgtggcccgacatgcatccatcacgttccttctcttcatcgcatttctgaca 21875433  T
Q  115 tcttcaccaaaggtctacctcgagttctttttgatgatttctggaccagtctaagcgtccgtgaatctcccgcttcgactgcgggggtctgatagaatgt 214  Q
    ||||||||||||   |||||||||||||||||||||||||||| |||| |||||||||  ||| | |||| |||| |||    ||||| ||||| |||||    
T  21875432 tcttcaccaaagacatacctcgagttctttttgatgatttctgaaccaatctaagcgtttgtgtacctcctgctttgac-aatggggtgtgataaaatgt 21875334  T
Q  215 ttgacatttgactatgtaattatgttagtaattattttgtaattactctc 264  Q
    ||||| |     | |||||||||||| |||||||||||||||||||||||    
T  21875333 ttgactt-----tctgtaattatgttcgtaattattttgtaattactctc 21875289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 242 - 316
Target Start/End: Complemental strand, 21875279 - 21875203
Alignment:
Q  242 gtaattattttgtaattactctcctgggtttgattctacctattgtaactata--tatacttttgatcattatcaat 316  Q
    ||||||||||||||||||||||||   |||||| | | ||||| |||||||||  |||||| |||||||||||||||    
T  21875279 gtaattattttgtaattactctccaatgtttgactattcctatcgtaactatatatatactcttgatcattatcaat 21875203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 21 - 212
Target Start/End: Original strand, 40911 - 41105
Alignment:
Q  21 aaacatattgagatggacattcactttgttcgataaaaggtcgcgtgtggccagacacgcgtccttcatgttccttctcgtcatcaaattgac---atct 117  Q
    ||||||||||| ||||||||||||||||| ||  ||||||| || ||||| ||| ||||||| ||||||||||| ||||| ||||| |||| |   ||||    
T  40911 aaacatattgaaatggacattcactttgtacgggaaaaggtagcctgtggtcaggcacgcgtacttcatgttccctctcgacatcagattgccgatatct 41010  T
Q  118 tcaccaaaggtctacctcgagttctttttgatgatttctggaccagtctaagcgtccgtgaatctcccgcttcgactgcgggggtctgatagaat 212  Q
    |||||||||| || |||||  |||| |||||||| ||  ||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||    
T  41011 tcaccaaagggcttcctcgcattctctttgatgactttcggaccagtctaagcgtccgtgaacctcccgcttcgactacgggggtgtgatagaat 41105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 227 - 342
Target Start/End: Original strand, 4701754 - 4701869
Alignment:
Q  227 tatgtaattatgttagtaattattttgtaattactctcctgggtttgattctacctattgtaactatatatacttttgatcattatcaatgaaaggcacc 326  Q
    |||||||||||||| || |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||     
T  4701754 tatgtaattatgttggttattattttgtaattactctcctaggtttgaatctacctattgtaactatatatactcttgatcattatcaatgaaaggcaca 4701853  T
Q  327 gaactgatttccttta 342  Q
     || ||||||||||||    
T  4701854 aaattgatttccttta 4701869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 24 - 208
Target Start/End: Complemental strand, 5821 - 5634
Alignment:
Q  24 catattgagatggacattcactttgttcgataaaaggtcgcgtgtggccagacacgcgtccttcatgttccttctcgtcatcaaattg---acatcttca 120  Q
    |||||||| ||||||||||||||||| ||  |||| || ||  ||||  || ||||||| ||||||||||||||||| ||||| ||||   | |||||||    
T  5821 catattgaaatggacattcactttgtacgggaaaaagtagctcgtggtgaggcacgcgtacttcatgttccttctcgacatcagattgcagatatcttca 5722  T
Q  121 ccaaaggtctacctcgagttctttttgatgatttctggaccagtctaagcgtccgtgaatctcccgcttcgactgcgggggtctgata 208  Q
     |||||| || |||||  |||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  5721 tcaaagggcttcctcgcattctctttgatgatttttggaccagtctaagcgtccgtgaacctcccgcttcgactgcgggggtgtgata 5634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 21 - 212
Target Start/End: Original strand, 31993 - 32187
Alignment:
Q  21 aaacatattgagatggacattcactttgttcgataaaaggtcgcgtgtggccagacacgcgtccttcatgttccttctcgtcatcaaattg---acatct 117  Q
    ||||||||||||||||||||||| ||||||||  ||||||| ||  |||| ||| | ||||||||||||||| | ||  | ||||| || |   ||||||    
T  31993 aaacatattgagatggacattcattttgttcgggaaaaggttgctcgtggtcaggctcgcgtccttcatgtttcctcaagacatcagatcgcatacatct 32092  T
Q  118 tcaccaaaggtctacctcgagttctttttgatgatttctggaccagtctaagcgtccgtgaatctcccgcttcgactgcgggggtctgatagaat 212  Q
    |||||||||  || |||||  |||| |||||||||||  |||||||||| |||||||||||| |||||||||||||||||||||| |||||||||    
T  32093 tcaccaaagaccttcctcgcattctatttgatgattttcggaccagtcttagcgtccgtgaacctcccgcttcgactgcgggggtgtgatagaat 32187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 6e-32; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 10260627 - 10260431
Alignment:
Q  18 actaaacatattgagatggacattcactttgttcgataaaaggtcgcgtgtggccagacacgcgtccttcatgttccttctcgtcatcaaat---tgaca 114  Q
    ||||| |||||||||||| ||||||  ||||| ||  | ||||| |||||||||||  |||||| |||||||||||||||||||||||| ||   ||| |    
T  10260627 actaagcatattgagatgaacattctatttgtacgcgagaaggtagcgtgtggccaagcacgcgcccttcatgttccttctcgtcatcagatagctgata 10260528  T
Q  115 tcttcaccaaaggtctacctcgagttctttttgatgatttctggaccagtctaagcgtccgtgaatctcccgcttcgactgcgggggtctgatagaa 211  Q
    ||||||||||||  ||| ||||||||||||||| |||| |  ||||  ||||||||||||||||| ||||| || ||||||| ||||| ||||||||    
T  10260527 tcttcaccaaagccctatctcgagttctttttgctgatattcggacatgtctaagcgtccgtgaacctcccactccgactgcaggggtgtgatagaa 10260431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 10260737 - 10260934
Alignment:
Q  18 actaaacatattgagatggacattcactttgttcgataaaaggtcgcgtgtggccagacacgcgtccttcatgttccttctcgtcatcaaat---tgaca 114  Q
    ||||| |||||||||||||||||||||||||| ||  | || || || ||||||||  |||||  |||||||||||||||||||||||| ||   |||      
T  10260737 actaagcatattgagatggacattcactttgtacgcgagaatgtagcctgtggccaagcacgcacccttcatgttccttctcgtcatcagataactgatg 10260836  T
Q  115 tcttcaccaaaggtctacctcgagttctttttgatgatttctggaccagtctaagcgtccgtgaatctcccgcttcgactgcgggggtctgatagaat 212  Q
    |||||||||||   ||| ||||||||||||||||||||||  |||||||| |||| ||  ||||| ||||||||  |||||||||||| |||||||||    
T  10260837 tcttcaccaaatccctatctcgagttctttttgatgattttcggaccagtttaagtgtttgtgaacctcccgctctgactgcgggggtgtgatagaat 10260934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 21 - 200
Target Start/End: Original strand, 40623188 - 40623370
Alignment:
Q  21 aaacatattgagatggacattcactttgttcgataaaaggtcgcgtgtggccagacacgcgtccttcatgttccttctcgtcatcaaattgac---atct 117  Q
    ||||||||||||||||||||||  ||||||||  |||| || || ||||| ||| ||| ||| ||||||||||| ||||| ||| | |||||    ||||    
T  40623188 aaacatattgagatggacattctttttgttcgggaaaaagtagcttgtggtcaggcacacgtacttcatgttccatctcgacataagattgaagatatct 40623287  T
Q  118 tcaccaaaggtctacctcgagttctttttgatgatttctggaccagtctaagcgtccgtgaatctcccgcttcgactgcgggg 200  Q
    |||||||||| || |||||  |||| ||||||||||| |||| |||| |||||||||||||| ||||| |||||||| |||||    
T  40623288 tcaccaaagggcttcctcgcattctctttgatgatttttggatcagtataagcgtccgtgaacctcccccttcgactccgggg 40623370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 24 - 195
Target Start/End: Complemental strand, 1586369 - 1586196
Alignment:
Q  24 catattgagatggacattcactttgttcgataaaaggtcgcgtgtggccagacacgcgtccttcatgttccttctcgtcatcaaattg---acatcttca 120  Q
    |||||||| ||||||||||||||||| |   ||||| | ||  |||| ||| ||||||| ||||||||||||||||| ||||| ||||   | |||||||    
T  1586369 catattgaaatggacattcactttgtactggaaaag-tagctcgtggtcaggcacgcgtacttcatgttccttctcgacatcagattgcagatatcttca 1586271  T
Q  121 ccaaaggtctacctcgagttctttttgatgatttctggaccagtctaagcgtccgtgaatctcccgcttcgactg 195  Q
    ||||||| || |||||  |||| ||||||||||| |||||||||||||| ||||||||| ||| | |||||||||    
T  1586270 ccaaagggcttcctcgcattctatttgatgatttttggaccagtctaagtgtccgtgaacctctcacttcgactg 1586196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0936 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0936
Description:

Target: scaffold0936; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 114 - 200
Target Start/End: Original strand, 3561 - 3647
Alignment:
Q  114 atcttcaccaaaggtctacctcgagttctttttgatgatttctggaccagtctaagcgtccgtgaatctcccgcttcgactgcgggg 200  Q
    |||||||||||||| |||||||||||||||||||||||| | ||||||||| ||||||| |||||| ||||| |||||||| |||||    
T  3561 atcttcaccaaaggcctacctcgagttctttttgatgatatttggaccagtataagcgttcgtgaacctccctcttcgactccgggg 3647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 212
Target Start/End: Complemental strand, 1546060 - 1545864
Alignment:
Q  21 aaacatattgagatggacattcactttgttcgataaaaggtcgcgtgtggccagacacgcgtccttcatgttccttctcgtcatcaaattg---acatct 117  Q
    ||||||||||||||||||||||| ||||| ||  |||| || |   |||| ||| ||||||| ||||||||||| ||  | ||||| ||||   ||||||    
T  1546060 aaacatattgagatggacattcattttgtacgggaaaaagtagtcggtggtcaggcacgcgtacttcatgttccctccagacatcagattgcagacatct 1545961  T
Q  118 --tcaccaaaggtctacctcgagttctttttgatgatttctggaccagtctaagcgtccgtgaatctcccgcttcgactgcgggggtctgatagaat 212  Q
      |||||||||| || |||||  |||| ||||| || ||  |||| |||||||||||||||||| ||||||||||||||||| |||| |||||||||    
T  1545960 cttcaccaaaggactccctcgtattctatttgacgactttcggactagtctaagcgtccgtgaacctcccgcttcgactgcgagggtgtgatagaat 1545864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University