View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9963_low_7 (Length: 416)
Name: NF9963_low_7
Description: NF9963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9963_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 5 - 397
Target Start/End: Original strand, 6512472 - 6512864
Alignment:
| Q |
5 |
tttttctaaaaaagtaactaaccttaattcttcatgcaaatgattactaatgaattaggagctgccaccgccgccaaaaccaccgtcattgccatcaaca |
104 |
Q |
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| T |
6512472 |
tttttctaaaaaagtaactaaccttaattcttcatgcaaatgattactaatgaattaggagctgccaccgccgccaaaaccaccgtcattgccatcaaca |
6512571 |
T |
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| Q |
105 |
ccggtcggaatagccagtgcgcggtgaaatgggcggtggaccaccttctaaagaagaactctaattgcattctcattcatgttcgtactaaacccctcaa |
204 |
Q |
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| T |
6512572 |
ccggtcggaatagccagtgcgcggtgaaatgggcggtggaccaccttctaaagaagaactccaattgcattctcattcatgttcgtaccaaacctctcaa |
6512671 |
T |
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| Q |
205 |
ttccagtaggtattcttctccttatctcccattcatccttcccacatcaacnnnnnnnnnnnntgaacctttcatcataaattttaacaaaaccctgttt |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
6512672 |
ttccagtaggtattcttctccttatctcccattcatccttctcacatcaacaaaaaaaataaatcaacctttcatcataaattttaacaaaaccctgttt |
6512771 |
T |
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| Q |
305 |
ttgtcctttcacctagattatcatattttaacctatgatatgatgtatggctataatttgaatttaaataaaactatttatgaatatagaatt |
397 |
Q |
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| T |
6512772 |
ttgtcctttcacctagattatcatattttaacctatgatatgatgtatggctataatttgaatttaaataaaactatttatgaatatagaatt |
6512864 |
T |
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