View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9964_1 (Length: 505)
Name: NF9964_1
Description: NF9964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9964_1 |
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Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 109 - 504
Target Start/End: Original strand, 41786026 - 41786422
Alignment:
| Q |
109 |
gatgaggatttggatagccttggggagaagaagagggaagcaataagacagctttgtttggttgttgagtttcatcgcgaccggtgtaactatctaatga |
208 |
Q |
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| T |
41786026 |
gatgaggatttggatagccttggggagaagaagagggaagcaataagacagctttgtttggttgttgagtttcatcgcgaccggtgtaactatctaatga |
41786125 |
T |
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| Q |
209 |
atttggtcgcaagtatgagagttaataagaagacatgaactttcttttttctgcttattattgtacatggagatggagtcattggaaaccaatactccta |
308 |
Q |
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| T |
41786126 |
atttggtcacaagtatgagagttaataagaagacatgaactttcttttttctgcttattattgtacatggagatggagtcattggaaaccaatactccta |
41786225 |
T |
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| Q |
309 |
agttttgtaaaattgaaaaatgattcattctattattgtttttcttactttacccctttcaatttttgattttagccagtttaaaaaatatggtggcaca |
408 |
Q |
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| T |
41786226 |
agttttgtaaaattgaaaaatgattcattctattattgtttttcttactttacccctttcaatttttgattttagccagtttaaaaaatatggtggcaca |
41786325 |
T |
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| Q |
409 |
ataggcctgattaccaaagtgataggtggatctattctcgcagaaaaaacagttagaaatgtttac-aaaagaaatacaaacacctgcaatgcaagc |
504 |
Q |
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| T |
41786326 |
ataggcctgattaccaaagtgataggtggatctattatcgcagaaaaaacagttagaaatgtttacaaaaagaaatacaaacacctgcaacgcaagc |
41786422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 41785932 - 41785983
Alignment:
| Q |
15 |
gagcaaagaaggaggagagaaattgaacttgacaaatgcagtgagccagctt |
66 |
Q |
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| T |
41785932 |
gagcaaagaaggaggagagaaattgaacttgacaaatgcagtgagccagctt |
41785983 |
T |
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