View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9964_6 (Length: 370)
Name: NF9964_6
Description: NF9964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9964_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 160; Significance: 3e-85; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 22 - 221
Target Start/End: Complemental strand, 15590752 - 15590553
Alignment:
| Q |
22 |
catcacttttaagtgaagtgttttataaatatcaccgttaagacaaagacctttgaaaagtgtagtgaaggttatggtatcaagaggatgataaccccac |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| | |
|
|
| T |
15590752 |
catcacttttaagtgaagtgttttataaatatcaccgttaagacaaagacctttgaaaagtgtagtgaaggttatggcatcaggaggatgataacccccc |
15590653 |
T |
|
| Q |
122 |
atcttaaggatcttgaagaatataggaaaggcaaaattgatgacaatggtcatagtagaaatgaatggcctaatatgagaattgtgtgaattggtgaatg |
221 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||| ||| |||| |||||||||||| ||||| |
|
|
| T |
15590652 |
atcttaaggatcttgaagaatagaggaaaggcaaaactgatgacaatggtcatagtagaaatgactggcctattatcagaactgtgtgaattggagaatg |
15590553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 223 - 343
Target Start/End: Complemental strand, 15590515 - 15590397
Alignment:
| Q |
223 |
tacttcttcttaacttgactcagcttaagggaaattcacacatgcttatgtcttacgtggacatgaggtggctgattactaccaatatatgaatgccacg |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15590515 |
tacttcttcttaacttgactcagcttaagggaaattcatg--tgcttatgtcttacgtggacatgaggtggctgattactaccaatatatgaatgccacg |
15590418 |
T |
|
| Q |
323 |
ttggtacatattgtcattgct |
343 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
15590417 |
ttggtacatattgtcattgct |
15590397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 15994668 - 15994712
Alignment:
| Q |
51 |
tatcaccgttaagacaaagacctttgaaaagtgtagtgaaggtta |
95 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
15994668 |
tatcaccgttaagacaaagacctttcaaaagtgtattgaaggtta |
15994712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 82
Target Start/End: Complemental strand, 15616866 - 15616831
Alignment:
| Q |
47 |
taaatatcaccgttaagacaaagacctttgaaaagt |
82 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |
|
|
| T |
15616866 |
taaatatcaccgttaagacaaagaccttagaaaagt |
15616831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 342
Target Start/End: Complemental strand, 15602522 - 15602482
Alignment:
| Q |
302 |
taccaatatatgaatgccacgttggtacatattgtcattgc |
342 |
Q |
| |
|
|||||||||||||||||||||| || |||| |||||||||| |
|
|
| T |
15602522 |
taccaatatatgaatgccacgtcggaacatcttgtcattgc |
15602482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 101
Target Start/End: Complemental strand, 29893783 - 29893741
Alignment:
| Q |
59 |
ttaagacaaagacctttgaaaagtgtagtgaaggttatggtat |
101 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
29893783 |
ttaagacaaagacccttgatgagtgtagtgaaggttatggtat |
29893741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 29908827 - 29908778
Alignment:
| Q |
53 |
tcaccgttaagacaaagacctttgaaaagtgtagtgaaggttatggtatc |
102 |
Q |
| |
|
||||| || ||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
29908827 |
tcacctttgagacaaagacccttgatgagtgtagtgaaggttatggtatc |
29908778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 29928509 - 29928460
Alignment:
| Q |
53 |
tcaccgttaagacaaagacctttgaaaagtgtagtgaaggttatggtatc |
102 |
Q |
| |
|
||||| || ||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
29928509 |
tcacctttgagacaaagacccttgatgagtgtagtgaaggttatggtatc |
29928460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 30119095 - 30119144
Alignment:
| Q |
53 |
tcaccgttaagacaaagacctttgaaaagtgtagtgaaggttatggtatc |
102 |
Q |
| |
|
||||| || ||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
30119095 |
tcacctttgagacaaagacccttgatgagtgtagtgaaggttatggtatc |
30119144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 29115488 - 29115448
Alignment:
| Q |
62 |
agacaaagacctttgaaaagtgtagtgaaggttatggtatc |
102 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
29115488 |
agacaaagacccttgatgagtgtagtgaaggttatggtatc |
29115448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 3642271 - 3642227
Alignment:
| Q |
55 |
accgttaagacaaagacctttgaaaagtgtagtgaaggttatggt |
99 |
Q |
| |
|
|||||||||||||| ||| |||| ||||||| ||||||||||||| |
|
|
| T |
3642271 |
accgttaagacaaataccattgataagtgtattgaaggttatggt |
3642227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University