View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9964_8 (Length: 351)

Name: NF9964_8
Description: NF9964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9964_8
NF9964_8
[»] chr1 (7 HSPs)
chr1 (3-351)||(51772106-51772454)
chr1 (43-190)||(51780133-51780280)
chr1 (44-163)||(51807869-51807988)
chr1 (43-145)||(51803934-51804036)
chr1 (287-351)||(51807687-51807751)
chr1 (300-351)||(51779991-51780046)
chr1 (300-350)||(51803802-51803852)
[»] scaffold0710 (2 HSPs)
scaffold0710 (43-190)||(6775-6922)
scaffold0710 (300-351)||(6633-6688)


Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 3 - 351
Target Start/End: Complemental strand, 51772454 - 51772106
Alignment:
Q  3 tagataatactgcgaaattttcaacagactctcgtcctcactcacactaaaataccgcataaacactttctccactccacccacttgaagaatttgagcc 102  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51772454 tagataacactgcgaaattttcaacaggctctcgtcctcactcacactaaaataccgcataaacactttctccactccacccacttgaagaatttgagcc 51772355  T
Q  103 cctaagctcaattttctcttaattgtttcagaaatgtttgctctaagtcttgctgaaatttaagaattatatataataggattagaaacgatcgagtaaa 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  51772354 cctaagctcaattttctcttaattgtttcagaaatgtttgctctaagtcttactgaaatttaagaattatatataataggattagaaacgatcgagtaaa 51772255  T
Q  203 tgactatatgaggagttcataaactgatatagatattgcagacaaaaggcatggacttcataaactatatatgcaataacaattggaaacacatctcagt 302  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51772254 tgactatacgaggagttcataaactgatatagatattgcagacaaaaggcatggacttcataaactatatatgcaataacaattggaaacacatctcagt 51772155  T
Q  303 cttacaagggtactcaccatgttcttggactttttgtgagagactatca 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  51772154 cttacaagggtactcaccatgttcttggactttttgtgagagactatca 51772106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 43 - 190
Target Start/End: Complemental strand, 51780280 - 51780133
Alignment:
Q  43 ctcacactaaaataccgcataaacactttctccactccacccacttgaagaatttgagcccctaagctcaattttctcttaattgtttcagaaatgtttg 142  Q
    ||||||||||||||  ||||||| | ||| |||||||||||||||| |||||||| ||||||||||||||| || ||| | |||||||||||||||||||    
T  51780280 ctcacactaaaatagtgcataaaaaatttatccactccacccacttaaagaattttagcccctaagctcaacttcctccttattgtttcagaaatgtttg 51780181  T
Q  143 ctctaagtcttgctgaaatttaagaattatatataataggattagaaa 190  Q
    |||  ||||||  |||||||| ||||||||||| ||||||||||||||    
T  51780180 ctcccagtcttaatgaaatttcagaattatataaaataggattagaaa 51780133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 44 - 163
Target Start/End: Complemental strand, 51807988 - 51807869
Alignment:
Q  44 tcacactaaaataccgcataaacactttctccactccacccacttgaagaatttgagcccctaagctcaattttctcttaattgtttcagaaatgtttgc 143  Q
    |||||||||||||  || |||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||| ||||||| ||| ||||||||    
T  51807988 tcacactaaaatattgcgtaaacactttctccactccacccatttgaagaatttgagcccctaagctcaaagttctctttattgttttagatatgtttgc 51807889  T
Q  144 tctaagtcttgctgaaattt 163  Q
    || || |||  |||||||||    
T  51807888 tccaactctcactgaaattt 51807869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 43 - 145
Target Start/End: Complemental strand, 51804036 - 51803934
Alignment:
Q  43 ctcacactaaaataccgcataaacactttctccactccacccacttgaagaatttgagcccctaagctcaattttctcttaattgtttcagaaatgtttg 142  Q
    ||||||||||||||| || |||||| ||||||||||||||||| |||||||||||||||||||||| ||||  | ||||| ||||||| ||| |||||||    
T  51804036 ctcacactaaaatactgcctaaacattttctccactccacccatttgaagaatttgagcccctaagttcaacgtcctctttattgttttagatatgtttg 51803937  T
Q  143 ctc 145  Q
    |||    
T  51803936 ctc 51803934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 287 - 351
Target Start/End: Complemental strand, 51807751 - 51807687
Alignment:
Q  287 ggaaacacatctcagtcttacaagggtactcaccatgttcttggactttttgtgagagactatca 351  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  51807751 ggaaacacatctaagtcttacaagggtactcaccgtgttcttggactctttgtgagagactatca 51807687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 300 - 351
Target Start/End: Complemental strand, 51780046 - 51779991
Alignment:
Q  300 agtcttacaagggtactcac----catgttcttggactttttgtgagagactatca 351  Q
    ||||||||||||||||||||    ||||||||||||||||||||||||||||||||    
T  51780046 agtcttacaagggtactcactcaccatgttcttggactttttgtgagagactatca 51779991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 300 - 350
Target Start/End: Complemental strand, 51803852 - 51803802
Alignment:
Q  300 agtcttacaagggtactcaccatgttcttggactttttgtgagagactatc 350  Q
    |||||||| ||||||||||||||||||||| ||| ||||||||||||||||    
T  51803852 agtcttactagggtactcaccatgttcttgaactctttgtgagagactatc 51803802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0710 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: scaffold0710
Description:

Target: scaffold0710; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 43 - 190
Target Start/End: Complemental strand, 6922 - 6775
Alignment:
Q  43 ctcacactaaaataccgcataaacactttctccactccacccacttgaagaatttgagcccctaagctcaattttctcttaattgtttcagaaatgtttg 142  Q
    ||||||||||||||  ||||||| | ||| |||||||||||||||| |||||||| ||||||||||||||| || ||| | |||||||||||||||||||    
T  6922 ctcacactaaaatagtgcataaaaaatttatccactccacccacttaaagaattttagcccctaagctcaacttcctccttattgtttcagaaatgtttg 6823  T
Q  143 ctctaagtcttgctgaaatttaagaattatatataataggattagaaa 190  Q
    |||  ||||||  |||||||| ||||||||||| ||||||||||||||    
T  6822 ctcccagtcttaatgaaatttcagaattatataaaataggattagaaa 6775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0710; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 300 - 351
Target Start/End: Complemental strand, 6688 - 6633
Alignment:
Q  300 agtcttacaagggtactcac----catgttcttggactttttgtgagagactatca 351  Q
    ||||||||||||||||||||    ||||||||||||||||||||||||||||||||    
T  6688 agtcttacaagggtactcactcaccatgttcttggactttttgtgagagactatca 6633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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