View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9965_low_1 (Length: 479)

Name: NF9965_low_1
Description: NF9965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9965_low_1
NF9965_low_1
[»] chr8 (1 HSPs)
chr8 (18-242)||(4200728-4200952)
[»] chr5 (3 HSPs)
chr5 (283-455)||(3805539-3805706)
chr5 (68-210)||(1529583-1529725)
chr5 (283-335)||(4879328-4879380)
[»] chr7 (2 HSPs)
chr7 (283-431)||(17978582-17978724)
chr7 (283-351)||(17264875-17264943)
[»] chr4 (2 HSPs)
chr4 (68-132)||(29740898-29740962)
chr4 (283-346)||(22460431-22460494)
[»] chr2 (2 HSPs)
chr2 (283-431)||(29522465-29522607)
chr2 (284-351)||(36620156-36620223)
[»] chr6 (3 HSPs)
chr6 (283-352)||(6253774-6253843)
chr6 (283-337)||(10895560-10895614)
chr6 (297-342)||(26091863-26091907)


Alignment Details
Target: chr8 (Bit Score: 157; Significance: 3e-83; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 4200952 - 4200728
Alignment:
Q  18 atgaacatgtatcagcatcccacagaggctcagtcagcacaccagatttaaccagacaaaataaatgttgaagcaccaagacatgcaatttgaacccaga 117  Q
    |||||||||||||||||||||| ||||||||||||||| |||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4200952 atgaacatgtatcagcatcccatagaggctcagtcagcgcaccggatttagccagacaaaataaatgttgaagtaccaagacatgcaatttgaacccaga 4200853  T
Q  118 cttatgagaagtatctatcaagacaaaaagtatctcctgttctattttcaaaaaatatgtcctataaaactgattgcagaacttcgaagcctgaaatttg 217  Q
    ||| ||  |||| ||||||||||||  || |||||| ||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  4200852 cttgtgcaaagtgtctatcaagacagcaaatatctcttgttctattgtcaaaatgtatgtcctataaaactgattgcagaacttcgaagcctgaaatttg 4200753  T
Q  218 ttcagcatctccaacaacagtttca 242  Q
    ||||||||||||||| |||||||||    
T  4200752 ttcagcatctccaacgacagtttca 4200728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 1e-51; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 283 - 455
Target Start/End: Complemental strand, 3805706 - 3805539
Alignment:
Q  283 acccattaattttgtgaaaataccataatacccctgagttatttttaatattactgccatgccactcactcacccacatccctcccactctcattgccgg 382  Q
    ||||||||||| || |||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||      
T  3805706 acccattaattctgggaaaataccataatattcctaagttatttttaatattactgccatgccactcactcacccaca----tcccactctcattgccaa 3805611  T
Q  383 ttttctccagaaccggaaagaaaagaacaagccatattttctcttctccccacccacaggaaaatcccacgac 455  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||  |||||||||||    
T  3805610 ttttctccagaacgggaaagaaaagaacaagccatattttcgcttctcgccacccacagg-caatcccacgac 3805539  T

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Target: chr5; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 68 - 210
Target Start/End: Complemental strand, 1529725 - 1529583
Alignment:
Q  68 accagacaaaataaatgttgaagcaccaagacatgcaatttgaacccagacttatgagaagtatctatcaagacaaaaagtatctcctgttctattttca 167  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||| ||||||||  || |||||| || |||||| |||    
T  1529725 accagacataataaatgttgaagcaccaagacatgcaatttgaacccaggcttatgaaaagtgtctgtcaagacagcaaatatctcttgctctattgtca 1529626  T
Q  168 aaaaatatgtcctataaaactgattgcagaacttcgaagcctg 210  Q
    ||||||| |||| |||||||||||||||||||| |||||||||    
T  1529625 aaaaataagtccgataaaactgattgcagaactccgaagcctg 1529583  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 335
Target Start/End: Complemental strand, 4879380 - 4879328
Alignment:
Q  283 acccattaattttgtgaaaataccataatacccctgagttatttttaatatta 335  Q
    ||||||| ||| ||||||||||||||| ||||| | ||||| |||||||||||    
T  4879380 acccatttattatgtgaaaataccatattacccttaagttaattttaatatta 4879328  T

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Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 283 - 431
Target Start/End: Complemental strand, 17978724 - 17978582
Alignment:
Q  283 acccattaattttgtgaaaataccataatacccctgagttatttttaatattactgccatgccactcactcacccacatccctcccactctcattgccgg 382  Q
    ||||||| ||||||||||||||| ||||| ||||||| ||| ||||||||||||| ||||||||||||   | |||   |  ||||||||| ||| |       
T  17978724 acccatttattttgtgaaaatactataatgcccctgaattaattttaatattactaccatgccactca---aacca---ctatcccactctaattccaat 17978631  T
Q  383 ttttctccagaaccggaaagaaaagaacaagccatattttctcttctcc 431  Q
     |||||||||||| ||||||||| ||| |||||||||||||||||||||    
T  17978630 atttctccagaacgggaaagaaatgaagaagccatattttctcttctcc 17978582  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 351
Target Start/End: Complemental strand, 17264943 - 17264875
Alignment:
Q  283 acccattaattttgtgaaaataccataatacccctgagttatttttaatattactgccatgccactcac 351  Q
    ||||||| |||||||||||| || ||||||||| |||  || |||||||||||||  ||||||||||||    
T  17264943 acccatttattttgtgaaaagactataatacccttgaagtaattttaatattactatcatgccactcac 17264875  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 29740898 - 29740962
Alignment:
Q  68 accagacaaaataaatgttgaagcaccaagacatgcaatttgaacccagacttatgagaagtatc 132  Q
    ||||||||||| ||||| |||||||||| |||||| ||||||||||||| ||||||| |||||||    
T  29740898 accagacaaaacaaatgctgaagcaccaggacatgtaatttgaacccaggcttatgaaaagtatc 29740962  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 346
Target Start/End: Complemental strand, 22460494 - 22460431
Alignment:
Q  283 acccattaattttgtgaaaataccataatacccctgagttatttttaatattactgccatgcca 346  Q
    ||||||| |||||||||||| || ||||||||| ||||||| |||||||||||||| |||||||    
T  22460494 acccatttattttgtgaaaagactataatacccatgagttaattttaatattactgtcatgcca 22460431  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 283 - 431
Target Start/End: Complemental strand, 29522607 - 29522465
Alignment:
Q  283 acccattaattttgtgaaaataccataatacccctgagttatttttaatattactgccatgccactcactcacccacatccctcccactctcattgccgg 382  Q
    ||||||| ||||||||||||||| ||||| ||||||  ||| ||||||||||||| ||||||||||||   | |||   |  ||||||||| ||| |       
T  29522607 acccatttattttgtgaaaatactataatgcccctggattaattttaatattactaccatgccactca---aacca---ctatcccactctaattccaat 29522514  T
Q  383 ttttctccagaaccggaaagaaaagaacaagccatattttctcttctcc 431  Q
     |||||||||||| ||||||||| ||| |||| ||||||||||||||||    
T  29522513 atttctccagaacgggaaagaaacgaagaagcaatattttctcttctcc 29522465  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 351
Target Start/End: Complemental strand, 36620223 - 36620156
Alignment:
Q  284 cccattaattttgtgaaaataccataatacccctgagttatttttaatattactgccatgccactcac 351  Q
    |||||||||||||||||| ||||||||||||| | || || ||| |||||||| || |||||| ||||    
T  36620223 cccattaattttgtgaaattaccataatacccttaagctaatttgaatattacagctatgccattcac 36620156  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 283 - 352
Target Start/End: Original strand, 6253774 - 6253843
Alignment:
Q  283 acccattaattttgtgaaaataccataatacccctgagttatttttaatattactgccatgccactcact 352  Q
    ||||||| ||| ||||||||||||||| | ||| ||||||| |||||||||||||  |||||||||||||    
T  6253774 acccatttattctgtgaaaataccatattgcccttgagttaattttaatattactatcatgccactcact 6253843  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 337
Target Start/End: Complemental strand, 10895614 - 10895560
Alignment:
Q  283 acccattaattttgtgaaaataccataatacccctgagttatttttaatattact 337  Q
    ||||||| ||| |||||||| || |||||||||||||| || |||||||||||||    
T  10895614 acccatttattctgtgaaaagactataatacccctgaggtaattttaatattact 10895560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 342
Target Start/End: Original strand, 26091863 - 26091907
Alignment:
Q  297 tgaaaataccataatacccctgagttatttttaatattactgccat 342  Q
    |||||||||||||||||||||| |||| ||||||||| ||||||||    
T  26091863 tgaaaataccataatacccctg-gttaattttaatatcactgccat 26091907  T

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