View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9965_low_2 (Length: 402)
Name: NF9965_low_2
Description: NF9965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9965_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 15 - 386
Target Start/End: Original strand, 47601352 - 47601726
Alignment:
| Q |
15 |
gggaatgtgaaccacaaagtgctcgtctacaaccattgagtcagagtaacctccgtatgtggtggtgccatcacgatatttggcaccacatgtggctgta |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47601352 |
gggaatgtgaaccacaaagtgctcgtctacaaccattgagtcagagtaacctccgtatgtggtggtgccatcacgatatttggcaccacatgtggctgta |
47601451 |
T |
|
| Q |
115 |
aagcgaggacaataactttcgagattttcagcacaattttgacacgatctgcatgaatcgatcatgaagccaacacccactttatctccaactttgaact |
214 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
47601452 |
aagcgaggacaataactttcaagattttcagcacaattttgacacgatctgcatgaatcgatcatgaagccaacacccactttgtctccaactttgaact |
47601551 |
T |
|
| Q |
215 |
tttctactttgcttcccacttttgtcactataccaacaatctcatgtctgtatttcttatactaattagaatcaaaataaagtaatggaaaaagctaag- |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
47601552 |
tttctactttgcttcccacttttgtcactataccaacaatctcatgtctgtatttcttatataaattagaatcaaaataaagtaatggaaaaagctaaga |
47601651 |
T |
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| Q |
314 |
-aatttctaagataatggtg-agtagtagtgattttaattaaagcatacccaggaactagtggataggtggatat |
386 |
Q |
| |
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||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47601652 |
caatttctaagataatggtgaagtagtggtgattttaattaaagcatacccaggaactagtggataggtggatat |
47601726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 16 - 293
Target Start/End: Complemental strand, 13389216 - 13388939
Alignment:
| Q |
16 |
ggaatgtgaaccacaaagtgctcgtctacaaccattgagtcagagtaacctccgtatgtggtggtgccatcacgatatttggcaccacatgtggctgtaa |
115 |
Q |
| |
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|||||||||||||| |||| ||| ||| |||||| ||||||||| |||||||| |||||| | || ||||| ||||| ||||||||||||||| |||| |
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| T |
13389216 |
ggaatgtgaaccacgaagttctcatctgcaaccaatgagtcagaataacctccatatgtgctcgttccatcgcgatacttggcaccacatgtgaaagtaa |
13389117 |
T |
|
| Q |
116 |
agcgaggacaataactttcgagattttcagcacaattttgacacgatctgcatgaatcgatcatgaagccaacacccactttatctccaactttgaactt |
215 |
Q |
| |
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| ||||| ||| |||| ||||| ||| ||||||||||||| |||| |||||||| | |||| |||||||||| ||||| |||||||| |||||||| |
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| T |
13389116 |
atgtgggacagtaattttcaagattgtcaacacaattttgacatgatcgacatgaatcaaccatgtagccaacacctactttgtctccaacattgaactt |
13389017 |
T |
|
| Q |
216 |
ttctactttgcttcccacttttgtcactataccaacaatctcatgtctgtatttcttatactaattagaatcaaaata |
293 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||||| ||||| |
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|
| T |
13389016 |
ttctactttgcttcccacctttgtcactataccaacaatctcatgcctgtatttattatataaattagaatctaaata |
13388939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 16 - 290
Target Start/End: Complemental strand, 13385395 - 13385121
Alignment:
| Q |
16 |
ggaatgtgaaccacaaagtgctcgtctacaaccattgagtcagagtaacctccgtatgtggtggtgccatcacgatatttggcaccacatgtggctgtaa |
115 |
Q |
| |
|
|||||||||||||| |||| ||| | ||||||| ||||||||| |||||||||| |||| |||| |||||||||| || ||||| ||| | || |
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| T |
13385395 |
ggaatgtgaaccacgaagttctcagccacaaccaatgagtcagaataacctccgtgtgtgatggttccatcacgatgcatgccaccaactgtagtagtgt |
13385296 |
T |
|
| Q |
116 |
a-gcgaggacaataactttcgagattttcagcacaattttgacacgatctgcatgaatcgatcatgaagccaacacccactttatctccaactttgaact |
214 |
Q |
| |
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| ||| || || ||| |||| ||||| ||| |||||||||||||||||| |||||||| || ||| |||||||||| ||||| |||||||| ||||||| |
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|
| T |
13385295 |
atgcgggg-cagtaattttcaagattgtcaacacaattttgacacgatcgacatgaatcaattatgtagccaacacctactttgtctccaacattgaact |
13385197 |
T |
|
| Q |
215 |
tttctactttgcttcccacttttgtcactataccaacaatctcatgtctgtatttcttatactaattagaatcaaa |
290 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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|
| T |
13385196 |
tttctactttgcttcccacctttgtcactataccaacaatctcatgcctgtatttcttatataaattagaatcaaa |
13385121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 13419531 - 13419745
Alignment:
| Q |
16 |
ggaatgtgaaccacaaagtgctcgtctacaaccattgagtcagagtaacctccgtatgtggtggtgccatcacgatatttggcaccacatgtggctgtaa |
115 |
Q |
| |
|
|||||| ||| |||||||||||||||| ||||||||||||| ||||||||||| |||||| ||||||||||||||| || |||||||||||| |||||| |
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|
| T |
13419531 |
ggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagtaacctccatatgtgacggtgccatcacgatactttgcaccacatgtgactgtaa |
13419630 |
T |
|
| Q |
116 |
agcgaggacaataactttcgagattttcagcacaattttgacacgatctgcatgaatcgatcatgaagccaacacccactttatctccaactttgaactt |
215 |
Q |
| |
|
| || || ||| | || |||| |||||||||||||| || || | |||||||| | |||| | || ||||| ||||| ||||||||||| ||||| |
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| T |
13419631 |
atgttgggcagtaattctcaagatcgtcagcacaattttggcatgaacgacatgaatcaaccatgtatcccacaccaactttgtctccaactttaaactt |
13419730 |
T |
|
| Q |
216 |
ttctactttgcttcc |
230 |
Q |
| |
|
||||||||||||||| |
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|
| T |
13419731 |
ttctactttgcttcc |
13419745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 16 - 282
Target Start/End: Original strand, 13413186 - 13413452
Alignment:
| Q |
16 |
ggaatgtgaaccacaaagtgctcgtctacaaccattgagtcagagtaacctccgtatgtggtggtgccatcacgatatttggcaccacatgtggctgtaa |
115 |
Q |
| |
|
|||||| ||| |||||||||||||||| ||||||||||||| ||||||||||| || ||| ||| ||||||||||| ||||||||||||||| || || |
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| T |
13413186 |
ggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagtaacctccataagtgacggttccatcacgatacttggcaccacatgtgactacaa |
13413285 |
T |
|
| Q |
116 |
agcgaggacaataactttcgagattttcagcacaattttgacacgatctgcatgaatcgatcatgaagccaacacccactttatctccaactttgaactt |
215 |
Q |
| |
|
| || || ||| | || ||||| ||| ||||| ||| || |||| |||||||| |||| | |||||||||| ||||| ||||||||||| ||||| |
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|
| T |
13413286 |
atttggggcagtaattctcaagattgtcattacaatcttggcatgatcgacatgaatcaatcaagtagccaacacctactttgtctccaactttaaactt |
13413385 |
T |
|
| Q |
216 |
ttctactttgcttcccacttttgtcactataccaacaatctcatgtctgtatttcttatactaatta |
282 |
Q |
| |
|
|| ||||||||||| |||| ||| |||||||| ||| |||||| |||||||| ||| || ||||| |
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|
| T |
13413386 |
ctccactttgcttcctacttctgttactatacccgcaagctcatgcctgtatttattacaccaatta |
13413452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 13426422 - 13426636
Alignment:
| Q |
16 |
ggaatgtgaaccacaaagtgctcgtctacaaccattgagtcagagtaacctccgtatgtggtggtgccatcacgatatttggcaccacatgtggctgtaa |
115 |
Q |
| |
|
|||||| ||| |||||||||||| ||| ||||||||||||| || |||||||| |||||| | ||||||||||||| || ||||||||||| |||| |
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|
| T |
13426422 |
ggaatgcgaatcacaaagtgctcatctgcaaccattgagtcggaataacctccatatgtgacgctgccatcacgatacttagcaccacatgtaactgttt |
13426521 |
T |
|
| Q |
116 |
agcgaggacaataactttcgagattttcagcacaattttgacacgatctgcatgaatcgatcatgaagccaacacccactttatctccaactttgaactt |
215 |
Q |
| |
|
| || || ||| | || |||| ||| |||||||||| || || | |||||||| | |||| | || || || ||||| ||||||||||| ||||| |
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|
| T |
13426522 |
gttgggggcagtaattctcaagatcttccgcacaattttcgcatgaacgacatgaatcaaccatgtatcccactcctactttgtctccaactttaaactt |
13426621 |
T |
|
| Q |
216 |
ttctactttgcttcc |
230 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
13426622 |
ttctactttgcttcc |
13426636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 264
Target Start/End: Original strand, 13454035 - 13454283
Alignment:
| Q |
16 |
ggaatgtgaaccacaaagtgctcgtctacaaccattgagtcagagtaacctccgtatgtggtggtgccatcacgatatttggcaccacatgtggctgtaa |
115 |
Q |
| |
|
|||||| ||| ||||||||||||||| |||||||||||||||| | ||||| | ||| |||| ||||||| ||||||| |||| ||| ||| | |
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|
| T |
13454035 |
ggaatgcgaaacacaaagtgctcgtcggaaaccattgagtcagagaagcctccatgagtgctggttccatcactgtatttggaaccatcagtgagtgtca |
13454134 |
T |
|
| Q |
116 |
agcgaggacaataactttcgagattttcagcacaattttgacacgatctgcatgaatcgatcatgaagccaacacccactttatctccaactttgaactt |
215 |
Q |
| |
|
| | ||||| ||| | || ||||| ||| ||||||||||||| || || ||||| | || | | || ||||| ||| | ||||||||||||||||| |
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|
| T |
13454135 |
attggggacagtaattctcaagattatcaacacaattttgacatgagtgacaagaatcaaccaagcatcccacacctactctgtctccaactttgaactt |
13454234 |
T |
|
| Q |
216 |
ttctactttgcttcccacttttgtcactataccaacaatctcatgtctg |
264 |
Q |
| |
|
|| |||||||||||||||| ||| ||||| |||||||| ||||||||| |
|
|
| T |
13454235 |
tttcactttgcttcccacttctgtaactatgccaacaatttcatgtctg |
13454283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 187 - 260
Target Start/End: Complemental strand, 13393452 - 13393379
Alignment:
| Q |
187 |
acacccactttatctccaactttgaacttttctactttgcttcccacttttgtcactataccaacaatctcatg |
260 |
Q |
| |
|
||||||||||| ||||||| ||||||||| |||||||||||||| || | |||||||||||| |||||||||| |
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|
| T |
13393452 |
acacccactttgtctccaattttgaacttctctactttgcttcctacctccgtcactataccagcaatctcatg |
13393379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 13393623 - 13393539
Alignment:
| Q |
16 |
ggaatgtgaaccacaaagtgctcgtctacaaccattgagtcagagtaacctccgtatgtggtggtgccatcacgatatttggcac |
100 |
Q |
| |
|
||||||||||| | ||||||||| ||| ||||||||||||||||||| ||||| |||||| || | ||||||| |||||||||| |
|
|
| T |
13393623 |
ggaatgtgaactataaagtgctcatctgcaaccattgagtcagagtaccctccatatgtgatgcttccatcactgtatttggcac |
13393539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 13447082 - 13447156
Alignment:
| Q |
16 |
ggaatgtgaaccacaaagtgctcgtctacaaccattgagtcagagtaacctccgtatgtggtggtgccatcacga |
90 |
Q |
| |
|
|||||| ||| |||||||||||||||| ||||||||||||| ||| ||||||| || ||| | |||||||||||| |
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|
| T |
13447082 |
ggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacga |
13447156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 13447259 - 13447299
Alignment:
| Q |
193 |
actttatctccaactttgaacttttctactttgcttcccac |
233 |
Q |
| |
|
||||| ||||||||||| ||||||| ||||||||||||||| |
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|
| T |
13447259 |
actttgtctccaactttaaacttttttactttgcttcccac |
13447299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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