View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9965_low_4 (Length: 272)
Name: NF9965_low_4
Description: NF9965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9965_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 11 - 254
Target Start/End: Complemental strand, 32058652 - 32058409
Alignment:
| Q |
11 |
cacagaccacctcaaaagaattaatgtccaaagcttctataaattcctgtgatacaaaatagaagattgtatcacacacatgaatcttgaggaaaaacag |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
32058652 |
cacaaaccacctcaaaagaattaatgtccaaagcttctataaattcctgtgatacaaaatagaagattgtatcacacacatgaatcttgaggaaacacag |
32058553 |
T |
|
| Q |
111 |
aatggaaaaacagcattttatcacacacataccatttcatggaccttgtaaacatcagatgatatatacaaatgagccatcacaaatttaaattcaagga |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32058552 |
aatggaaaaacagcattttatcacacacataccatttcatggaccttgtaaacatcagatgatatatacaaatgagccatcacaaatttaaattcaagga |
32058453 |
T |
|
| Q |
211 |
gattatgcattaaaactgatcagataatgacaaataaatgaggt |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32058452 |
gattatgcattaaaactgatcagataatgacaaataaatgaggt |
32058409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University