View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9965_low_5 (Length: 270)
Name: NF9965_low_5
Description: NF9965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9965_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 6 - 253
Target Start/End: Original strand, 40742017 - 40742265
Alignment:
| Q |
6 |
acctcgttcttgactgaagttgatctgttcgactactaaaattgttagcatgaataaatgtatttatggcaacaaaatcaattgagatttt-ccaccaaa |
104 |
Q |
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| T |
40742017 |
acctcgttcttgaccgaagttgatctgttcgactactaaaattgttagcatgaataaatgtatctatggcaacaaaatcaattgagatttttccgccaag |
40742116 |
T |
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| Q |
105 |
tcaacctttgttgcccagatttttcggtagaccagcttttgtcatcatgcattgcatgtgttctatgttggaaatgaagtttaagaccaattgattcttc |
204 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40742117 |
tcaacctttgttgcccagatttttcgatagaccagcttttgtcatcatgcatttcatgtgttctatgttggaaatgaagtttaagaccaattgattcttc |
40742216 |
T |
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| Q |
205 |
ttttatgttctaaaatcatgtatggtatatcaaaagtggtatttggttt |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40742217 |
ttttatgttctaaaatcatgtatggtatatcaaaagtggtatttggttt |
40742265 |
T |
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