View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9966_high_1 (Length: 390)
Name: NF9966_high_1
Description: NF9966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9966_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 25 - 380
Target Start/End: Original strand, 38894476 - 38894832
Alignment:
| Q |
25 |
gaggcaaatggaaaatctttggaggagatgtcaggtgagaacgaagaggaagccggaaccaatggagagttggagcaatctcattctcataacagaactg |
124 |
Q |
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| T |
38894476 |
gaggcaaatggaaaatctttggaggagatgtcaggtgagaacgaagaggaagccggaaccaatggagagttggagcaatctcattctcataacagaactg |
38894575 |
T |
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| Q |
125 |
tttcacatgtttagattgagtttaattagtttgttt-atcttgtaataaagcactatctttcaatttgtttaggatgcaccaaagctctcccttcccctg |
223 |
Q |
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| T |
38894576 |
tttcacatgtttagattgagtttaattagtttgttttatcttgtaataaagcactatctttcaatttgtttaggatgcaccaaagctctcccttcccctg |
38894675 |
T |
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| Q |
224 |
tcacgtctttatctcggattatgtttgatgaaccattagttctacaaatatcaaatgcaatgttgcaattgatgtttaatttttggatttaatagttagt |
323 |
Q |
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| T |
38894676 |
tcacgtctttatcccggattatgtctgatgaaccattagttctacaaatatcaaatgcaatgttgcaattgatgtttaatttttggatttaatagttagt |
38894775 |
T |
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| Q |
324 |
agtttcgattcattttcaataaccagtttcgactgtgttctgttttcttttcctttg |
380 |
Q |
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| T |
38894776 |
agtttcgattcattttcaaaaaccagtttcgactgtgttctattttcttttcctttg |
38894832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 38885290 - 38885341
Alignment:
| Q |
25 |
gaggcaaatggaaaatctttggaggagatgtcaggtgagaacgaagaggaag |
76 |
Q |
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|||||||||||||||||||| ||||| |||||||||||||| || ||||||| |
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| T |
38885290 |
gaggcaaatggaaaatctttagaggaaatgtcaggtgagaatgatgaggaag |
38885341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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