View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9966_high_10 (Length: 240)
Name: NF9966_high_10
Description: NF9966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9966_high_10 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 36423833 - 36423611
Alignment:
| Q |
18 |
ggttgaacatatggtgttccatcagcagaagtaaacactccatccatgtagtaagcattccttggacaatcatttaaagggtctaaaggcattgcttgca |
117 |
Q |
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| T |
36423833 |
ggttgaacatatggtgttccatcagcagaagtaaacactccatccatgtagtaagcatttcttggacaatcatttaaagggtctaaaggcattgcttgca |
36423734 |
T |
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| Q |
118 |
aaccaaatccatactcaccagcatccatgtatgtcttaaaataccatccatcagtaggatccatataaggcacaaaaagttcagaagtgaaccctttgta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36423733 |
aaccaaatccatactcaccagcatccatgtatgtcttaaaataccatccatcagtaggatccatataaggcacaaaaagttcagaagtgaaccctttgta |
36423634 |
T |
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| Q |
218 |
aataacatttctcatctctaatg |
240 |
Q |
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||||||||||||||||||||||| |
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| T |
36423633 |
aataacatttctcatctctaatg |
36423611 |
T |
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