View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9966_high_8 (Length: 260)

Name: NF9966_high_8
Description: NF9966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9966_high_8
NF9966_high_8
[»] chr2 (1 HSPs)
chr2 (84-249)||(7314052-7314217)
[»] chr3 (2 HSPs)
chr3 (84-249)||(11136571-11136736)
chr3 (1-83)||(45633773-45633855)
[»] scaffold0010 (1 HSPs)
scaffold0010 (153-245)||(245939-246031)
[»] chr7 (1 HSPs)
chr7 (153-245)||(37282167-37282259)
[»] chr5 (1 HSPs)
chr5 (153-223)||(40933961-40934032)
[»] scaffold0716 (1 HSPs)
scaffold0716 (203-249)||(7245-7291)
[»] scaffold0894 (1 HSPs)
scaffold0894 (204-249)||(1-46)
[»] chr6 (1 HSPs)
chr6 (153-223)||(11232957-11233029)
[»] chr1 (1 HSPs)
chr1 (153-228)||(23348366-23348440)


Alignment Details
Target: chr2 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 84 - 249
Target Start/End: Complemental strand, 7314217 - 7314052
Alignment:
Q  84 ttaaaaataagacttctggtgatatataacaaaaggtaatggtagtttttgatatagtttccaagcacttttctcatggacatattttttgaagtcgtat 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7314217 ttaaaaataagacttctggtgatatataacaaaaggtaatggtagtttttgatatagtttccaagcacttttctcatggacatattttttgaagtcgtat 7314118  T
Q  184 ttgatggctgaattgttttgtcctgttgtaagttccattatcaaatattgacctatatgtgccttt 249  Q
    ||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7314117 ttgatggcataattgttttatcctgttgtaagttccattatcaaatattgacctatatgtgccttt 7314052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 84 - 249
Target Start/End: Complemental strand, 11136736 - 11136571
Alignment:
Q  84 ttaaaaataagacttctggtgatatataacaaaaggtaatggtagtttttgatatagtttccaagcacttttctcatggacatattttttgaagtcgtat 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  11136736 ttaaaaataagacttctggtgatatataacaaaaggtaatggtagtttttgatatagtttccaagcacttttctcatggacatattttttgaagtcgtgt 11136637  T
Q  184 ttgatggctgaattgttttgtcctgttgtaagttccattatcaaatattgacctatatgtgccttt 249  Q
    ||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11136636 ttgatggcgtaattgttttatcctgttgtaagttccattatcaaatattgacctatatgtgccttt 11136571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 45633773 - 45633855
Alignment:
Q  1 ttaatttccaccaggcaaaagatgccacatcagcaggtgtagtaaagggtgtacaaaacaaagtggtcgatctatcatttctc 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45633773 ttaatttccaccaggcaaaagatgccacatcagcaggtgtagtaaagggtgtacaaaacaaagtggtcgatctatcatttctc 45633855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 153 - 245
Target Start/End: Original strand, 245939 - 246031
Alignment:
Q  153 tttctcatggacatattttttgaagtcgtatttgatggctgaattgttttgtcctgttgtaagttccattatcaaatattgacctatatgtgc 245  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  245939 tttctcatggacatattttttaaagtcgtatttgatggcagaattgttttgtcctgttgtaagttccattatcaaatattgacctatatgtgc 246031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 153 - 245
Target Start/End: Complemental strand, 37282259 - 37282167
Alignment:
Q  153 tttctcatggacatattttttgaagtcgtatttgatggctgaattgttttgtcctgttgtaagttccattatcaaatattgacctatatgtgc 245  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  37282259 tttctcatggacatattttttaaagtcgtatttgatggcagaattgttttgtcccgttgtaagttccattatcaaatattgacctatatgtgc 37282167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 40933961 - 40934032
Alignment:
Q  153 tttctcatggacatattttttgaa-gtcgtatttgatggctgaattgttttgtcctgttgtaagttccatta 223  Q
    ||||||||||||||||||||| || |||||||||||| |||||||||||||||||| |||||| ||||||||    
T  40933961 tttctcatggacatatttttttaaagtcgtatttgatagctgaattgttttgtccttttgtaaattccatta 40934032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0716 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0716
Description:

Target: scaffold0716; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 7245 - 7291
Alignment:
Q  203 gtcctgttgtaagttccattatcaaatattgacctatatgtgccttt 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  7245 gtcctgttgtaagttccattatcaaatattgacctatatgtgccttt 7291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0894 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0894
Description:

Target: scaffold0894; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 204 - 249
Target Start/End: Original strand, 1 - 46
Alignment:
Q  204 tcctgttgtaagttccattatcaaatattgacctatatgtgccttt 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  1 tcctgttgtaagttccattatcaaatattgacctatatgtgccttt 46  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 11232957 - 11233029
Alignment:
Q  153 tttctcatggacatattttttgaa--gtcgtatttgatggctgaattgttttgtcctgttgtaagttccatta 223  Q
    |||||||||||| |||||||||||  |||||||||||| |||||||||||||||||| |||||| ||||||||    
T  11232957 tttctcatggacgtattttttgaaaagtcgtatttgatagctgaattgttttgtccttttgtaaattccatta 11233029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 228
Target Start/End: Original strand, 23348366 - 23348440
Alignment:
Q  153 tttctcatggacatattttttgaagtcgtatttgatggctgaattgttttgtcctgttgtaagttccattatcaaa 228  Q
    ||||||||||||| ||||||| ||||||||||||||     |||||||||||  ||||||||||||||||||||||    
T  23348366 tttctcatggacagatttttt-aagtcgtatttgatataaaaattgttttgttttgttgtaagttccattatcaaa 23348440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University