View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9966_low_14 (Length: 214)
Name: NF9966_low_14
Description: NF9966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9966_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 197
Target Start/End: Complemental strand, 7303481 - 7303296
Alignment:
| Q |
12 |
caaaggccaaatacagaagcgctataatagaccagcaacacaacaaacactgaaaaaacaccaaatacatgaaactcccctttttgaatctaatgtttta |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7303481 |
caaaggccaaatacagaagcgctataatagaccagcaacacaacaaacactgaaaaaacaccaaatacatgaaactcccctttttgaatctaatgtttta |
7303382 |
T |
|
| Q |
112 |
attttaatacatgaaactaattttaatacatgaccagcagcactataacacatcagaaactaatattttaactttaatactactac |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7303381 |
attttaatacatgaaactaattttaatacatgaccagcagcactataacacatcagaaactaatattttaactttaatactactac |
7303296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 197
Target Start/End: Original strand, 16444704 - 16444889
Alignment:
| Q |
12 |
caaaggccaaatacagaagcgctataatagaccagcaacacaacaaacactgaaaaaacaccaaatacatgaaactcccctttttgaatctaatgtttta |
111 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16444704 |
caaaggccaaatacagaagcgctataatagaccagcaacacaacaaacactgaaaaaacaccaaatacatgaaactcccctttttgaatctaatgtttta |
16444803 |
T |
|
| Q |
112 |
attttaatacatgaaactaattttaatacatgaccagcagcactataacacatcagaaactaatattttaactttaatactactac |
197 |
Q |
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| T |
16444804 |
attttaatacatgaaactaattttaatacatgaccagcagcactataacacatcagaaactaatattttaactttaatactactac |
16444889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 197
Target Start/End: Complemental strand, 6123659 - 6123474
Alignment:
| Q |
12 |
caaaggccaaatacagaagcgctataatagaccagcaacacaacaaacactgaaaaaacaccaaatacatgaaactcccctttttgaatctaatgtttta |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6123659 |
caaaggccaaatacagaagcgctataatagaccagcaacacaacaaacactgaaaaaacaccaaatacatgaaactcccctttttgaatctaatgtttta |
6123560 |
T |
|
| Q |
112 |
attttaatacatgaaactaattttaatacatgaccagcagcactataacacatcagaaactaatattttaactttaatactactac |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6123559 |
attttaatacatgaaactaattttaatacatgaccagcagcactataacacatcagaaactaatattttaactttaatactactac |
6123474 |
T |
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