View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9966_low_3 (Length: 384)
Name: NF9966_low_3
Description: NF9966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9966_low_3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 371
Target Start/End: Complemental strand, 8336848 - 8336495
Alignment:
| Q |
18 |
agttgttcaggacatgggttactgtcaactaaatgaagggaaaaaacttcaagtcaatttcactatgaaagatataaggtttagttacactttagttatc |
117 |
Q |
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| T |
8336848 |
agttgttcaggacatgggttactgtcaactaaatgaagggaaaaagcttcaagtcaatttcactatgaaagatataaggtttagttacactttagttatc |
8336749 |
T |
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| Q |
118 |
atattgcaatacttattaccttataattttttccttagagttttcaaccaacttaaattcctttcgtgttatgattcttagtgatattgttctgaactgt |
217 |
Q |
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| T |
8336748 |
atattgcaatacttattaccttataattttttccttacagttttcaaccaacttaaattcctttcgtgttatgattcttagtgatattgttctgaactgt |
8336649 |
T |
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| Q |
218 |
actctgtgggaggagtatgctgcaaagtttgttcaatataacagtgataggaaagaggctggtccagtcattgttctgatgaagtattgcaaaatcaagg |
317 |
Q |
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| T |
8336648 |
actctgtgggaggagtatgctgcaaagtttgttcaatataacagtgataggaaagaggctggtccagtcattgttctgctgaagtattgcaaaatcaagg |
8336549 |
T |
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| Q |
318 |
aagaaggtttcaatagtttactggatttttcgtgtttctttaactaccttttta |
371 |
Q |
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| T |
8336548 |
aagaaggtttcaatagtttactggatttttcgtgtttctttaactatcttttta |
8336495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 384
Target Start/End: Complemental strand, 10233964 - 10233594
Alignment:
| Q |
18 |
agttgttcaggacatgggttactgtcaactaaatgaagggaaaaaacttcaagtcaatttcactatgaaagatataaggtttagttacactttagttatc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10233964 |
agttgttcaggacatgggttactgtcaactaaatgaagggaaaaagcttcaagtcaatttcactatgaaagatataaggtttagttacactttagttatc |
10233865 |
T |
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| Q |
118 |
atattgcaatacttattaccttataattttttccttagagttttcaaccaacttaaattcctttcgtgttatgattcttagtgatattgttctgaactgt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
10233864 |
atattgcaatacttattaccttataattttttccttagagttttcaaccaacttaaattcctttcgtgttatgattctttgtgatattgttctgaactgt |
10233765 |
T |
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| Q |
218 |
actctgtgggaggagtatgctgcaaagtttgttcaatataacagtgataggaaagaggctggtccagtcattgttctgatgaagtattgcaaaatcaagg |
317 |
Q |
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||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
10233764 |
actctgtgggaggagtatgctccgaagtttgttcaatataacagtgataggaaagaggctggtctagtcattgttctactgaagtattgcaaaatcaagg |
10233665 |
T |
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| Q |
318 |
aagaaggtttcaatagtttactggatttttcgtgtttct----ttaactacctttttactaacattatttt |
384 |
Q |
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| T |
10233664 |
aagaaggtttcaatagtttactggatttttcgtgtttctttaattaactacctttttactaacattatttt |
10233594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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