View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9966_low_5 (Length: 332)

Name: NF9966_low_5
Description: NF9966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9966_low_5
NF9966_low_5
[»] chr3 (1 HSPs)
chr3 (12-308)||(36423285-36423581)


Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 12 - 308
Target Start/End: Original strand, 36423285 - 36423581
Alignment:
Q  12 aagcaaaggcactgtcaatttctacatgaaaccgatagaaggtttaactgtgttggttgatatggataagagagaggttgtgtccattacagataatgga 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36423285 aagcaaaggcactgtcaatttctacatgaaaccgatagaaggtttaactgtgttggttgatatggataagagagaggttgtgtccattacagataatgga 36423384  T
Q  112 ctaaacattcctgtcgcaaatggtatcgacactgattaccgttactcagttcagaaactcaacggagagttgaacttgataaatccaatttccttggaac 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36423385 ctaaacattcctgtcgcaaatggtatcgacactgattaccgttactcagttcagaaactcaacggagagttgaacttgataaatccaatttccttggaac 36423484  T
Q  212 aaccaaaaggtccaagctttacagttgatggacatttggtgaaatgggctaattgggaatttcatctcaaacccgaccctagagctggaaccattat 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36423485 aaccaaaaggtccaagctttacagttgatggacatttggtgaaatgggctaattgggaatttcatctcaaacccgaccctagagctggaaccattat 36423581  T

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