View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9966_low_6 (Length: 303)
Name: NF9966_low_6
Description: NF9966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9966_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 49509847 - 49510142
Alignment:
| Q |
1 |
ttttcaatgtagatgaagttttttgctcttcgtatagcatttatataggcatcttgaatgcttctatcaatgatgttatcttttccagtaacaagacctt |
100 |
Q |
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| T |
49509847 |
ttttcaatgtagatgaaattcttagctcgtcgaatagcgtttatgtaggcatcttgaatgcttctatcaatgatgttatcttttccagtaacaagacctt |
49509946 |
T |
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| Q |
101 |
tttcagcggcttctgttggatcttgagggaagccagaagcagcaccagcatcgatcgatctaaacaactgaacattccatgtattgttttgatttgccgt |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49509947 |
tttcggcggcttctgttggatcttgagggaagccagaagcagcaccagcatcgattgatctaaacaactgaacattccatgtattgttttgatttgccgt |
49510046 |
T |
|
| Q |
201 |
ggcaacattcgatacacgagcaatatcatattcacgaaacatgctcgaaggtagtggaattaattgttttccaacttgcttttcccatctctgctc |
296 |
Q |
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| T |
49510047 |
ggcaacattcgatacacgagcaatatcatattcacgaaacatgctcgaaggtagtggaattaattgttttccaacttgcttttcccatctttgctc |
49510142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 49520993 - 49521171
Alignment:
| Q |
1 |
ttttcaatgtagatgaagttttttgctcttcgtatagcatttatataggcatcttgaatgcttctatcaatgatgttatcttttccagtaacaagacctt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||| |
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| T |
49520993 |
ttttcaatgtagatgaagttttttgctcttcgtatagcatttatataggcatcttgaatgcttctatcaatgatgttgtcttttccactaacaaggccta |
49521092 |
T |
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| Q |
101 |
tttcagcggcttctgttggatcttgagggaagccagaagcagcaccagcatcgatcgatctaaacaactgaacattcca |
179 |
Q |
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| T |
49521093 |
attctataacttcatttggtgcttgagggaagttagaaacagcaccaccatcaatggatctaaacaactgaacactcca |
49521171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 44662720 - 44662641
Alignment:
| Q |
1 |
ttttcaatgtagatgaagttttttgctcttcgtatagcatttatataggcatcttgaatgcttctatcaatgatgttatc |
80 |
Q |
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||||||||||||||||| || ||||| | ||| |||||||| ||||| ||||||||||| || ||||| || |||||||| |
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| T |
44662720 |
ttttcaatgtagatgaaattctttgcgcgtcgaatagcattgatataagcatcttgaatactcctatctattatgttatc |
44662641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 2416338 - 2416424
Alignment:
| Q |
1 |
ttttcaatgtagatgaagttttttgctcttcgtatagcatttatataggcatcttgaatgcttctatcaatgatgttatcttttcca |
87 |
Q |
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|||||||| ||||||||||| ||||| | || |||||||| ||||| |||||||||||||| | ||| ||||| ||||| |||||| |
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| T |
2416338 |
ttttcaatatagatgaagttctttgcacgccgaatagcattaatataagcatcttgaatgctacgatcgatgatattatcctttcca |
2416424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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