View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9966_low_7 (Length: 301)
Name: NF9966_low_7
Description: NF9966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9966_low_7 |
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| [»] scaffold0432 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 14 - 292
Target Start/End: Original strand, 9821162 - 9821439
Alignment:
| Q |
14 |
cttttgtctcataattcacaatttggtcatctactttcaaatcgacaattttagtccttgacatttttcccacctatacaatttgaggcttaattttgat |
113 |
Q |
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| T |
9821162 |
cttttgtctcataattcacaatttggtcatctacttttaaatcgacaattttagtccttgacatttttcccacctatacaatttgaggcttaattttgat |
9821261 |
T |
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| Q |
114 |
tgtttgtaggtgatattcttgtgtggaaacttagttggctacatatcactttgtaggtagttacttaaaagttaataactttcactataacatacattaa |
213 |
Q |
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| T |
9821262 |
tgtttgtaggtgatattcttgtgtggaaacttagttggctacatatcactttgtaggtagttacttaaaagttaataactttcactataacatacattaa |
9821361 |
T |
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| Q |
214 |
tctatattacaaaaccaattaaatttgttataaaatacnnnnnnnaatcaagttggggtgcaaatggatctgcaacacg |
292 |
Q |
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| T |
9821362 |
tctatattacaaaaccaattaaatttgttataaaatactttttttaatcaa-atggggtgtaaatggatctgcaacacg |
9821439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 9716783 - 9716984
Alignment:
| Q |
14 |
cttttgtctcataattcacaatttggtcatctactttcaaa-tcgacaattttagtccttgacatttttcccacctatacaatttgaggcttaattttga |
112 |
Q |
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| T |
9716783 |
cttttgtctcataattcacaatttggtcatctactttcaaaatcgacaattttagtccttgacatttttcccacctatacaatttgaggcttaattttga |
9716882 |
T |
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| Q |
113 |
ttgtttgtaggtgatattcttgtgtggaaacttagttggctacatatcactttgtaggtagttacttaaaagttaata--actttcactataacatacat |
210 |
Q |
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| T |
9716883 |
ttgtttgtaggtgatattcttgtgtgaaaacttagtgggcgacatatcactttgtaggtggttacttaaaagttaatattcctttcactaaaacatacat |
9716982 |
T |
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| Q |
211 |
ta |
212 |
Q |
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|| |
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| T |
9716983 |
ta |
9716984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 14 - 286
Target Start/End: Original strand, 9810381 - 9810648
Alignment:
| Q |
14 |
cttttgtctcataattcacaatttggtcatctactttcaaatcgacaattttagtccttgacatttttcccacct-----atacaatttgaggcttaatt |
108 |
Q |
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| T |
9810381 |
cttttgtctcataattcacaatttggtcatctactttcaaatcgacaattttagtccttgacattattcccacctatacaatacaatttgaggcttaatt |
9810480 |
T |
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| Q |
109 |
ttgattgtttgtaggtgatattcttgtgtggaaacttagttggctacatatcactttgtaggtagttacttaaaagttaata--actttcactataacat |
206 |
Q |
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| T |
9810481 |
ttgattgtttgcaggtgatattcttgtgtggaaact------------tatcactttgtaggtggttacttaaaagttaatattcctttcactataacat |
9810568 |
T |
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| Q |
207 |
acattaatctatattacaaaaccaattaaatttgttataaaatacnnnnnnnaatcaagttggggtgcaaatggatctgc |
286 |
Q |
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| T |
9810569 |
acattaatctatattacaaaaccaattaaatttgatctaaaatactttttttaaggaagtgggggtgcaaatggatctgc |
9810648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 156; Significance: 7e-83; HSPs: 1)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 15 - 251
Target Start/End: Original strand, 14714 - 14951
Alignment:
| Q |
15 |
ttttgtctcataattcacaatttggtcatctactttcaaatcgacaattttagtccttgacatttttcccacctatacaatttgaggcttaattttgatt |
114 |
Q |
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| T |
14714 |
ttttgtctgataattcacaatttggtcatctactttcaaatccacaattctagtccttgacattttttccatctatacaattcgaggcttaattttgatt |
14813 |
T |
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| Q |
115 |
gtttgtaggtgatattcttgtgtggaaacttagttggctacatatcactttgtaggtagttacttaaaagttaata--actttcactataacatacatta |
212 |
Q |
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||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| | |||||||||||||||| |||||| | |||||||||| |
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| T |
14814 |
gtttgtaggtgatattcttatgtggaaacttagttggcgacatatcactttgtaggtggatacttaaaagttaatattcctttcatgaaaacatacatt- |
14912 |
T |
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| Q |
213 |
atctatattacaaaaccaattaaatttgttataaaatac |
251 |
Q |
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|||||||||||||||||||||||||||| | |||||||| |
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| T |
14913 |
atctatattacaaaaccaattaaatttgatgtaaaatac |
14951 |
T |
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