View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9967_high_2 (Length: 420)

Name: NF9967_high_2
Description: NF9967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9967_high_2
NF9967_high_2
[»] chr1 (5 HSPs)
chr1 (6-382)||(23432079-23432452)
chr1 (162-398)||(48632323-48632553)
chr1 (199-395)||(18488403-18488595)
chr1 (228-277)||(127931-127980)
chr1 (279-393)||(32741043-32741154)
[»] chr7 (12 HSPs)
chr7 (162-398)||(10678484-10678717)
chr7 (194-393)||(27616511-27616708)
chr7 (243-398)||(37338583-37338734)
chr7 (177-314)||(46533117-46533254)
chr7 (162-242)||(44572277-44572357)
chr7 (272-393)||(45215868-45215989)
chr7 (162-220)||(45215790-45215848)
chr7 (272-393)||(22291006-22291124)
chr7 (341-393)||(44572428-44572481)
chr7 (200-277)||(46014514-46014591)
chr7 (207-277)||(8799705-8799775)
chr7 (323-398)||(44182344-44182420)
[»] chr3 (11 HSPs)
chr3 (199-396)||(43921720-43921912)
chr3 (177-384)||(10515919-10516122)
chr3 (201-398)||(11410875-11411070)
chr3 (323-395)||(26565495-26565568)
chr3 (327-395)||(21408750-21408819)
chr3 (323-383)||(10657332-10657392)
chr3 (160-313)||(25092124-25092278)
chr3 (157-322)||(49861215-49861370)
chr3 (228-393)||(17715644-17715809)
chr3 (228-393)||(19016873-19017038)
chr3 (230-277)||(27109536-27109583)
[»] chr5 (4 HSPs)
chr5 (162-398)||(40838093-40838326)
chr5 (193-306)||(32676415-32676528)
chr5 (21-73)||(36772270-36772322)
chr5 (13-73)||(21138980-21139041)
[»] chr4 (10 HSPs)
chr4 (210-395)||(17732969-17733152)
chr4 (273-393)||(40289002-40289118)
chr4 (199-318)||(658249-658369)
chr4 (177-383)||(54305826-54306020)
chr4 (272-377)||(45612284-45612385)
chr4 (161-228)||(31734739-31734806)
chr4 (323-385)||(29987876-29987938)
chr4 (162-241)||(3420131-3420210)
chr4 (199-242)||(55681016-55681059)
chr4 (260-322)||(18198649-18198711)
[»] chr8 (5 HSPs)
chr8 (199-322)||(15850239-15850362)
chr8 (224-396)||(18602871-18603038)
chr8 (272-377)||(15131813-15131914)
chr8 (162-211)||(15131734-15131783)
chr8 (272-354)||(31772664-31772742)
[»] chr2 (9 HSPs)
chr2 (162-383)||(26576269-26576478)
chr2 (272-383)||(32200688-32200796)
chr2 (160-322)||(15989802-15989964)
chr2 (162-248)||(4747817-4747903)
chr2 (250-318)||(44649803-44649870)
chr2 (276-322)||(17651516-17651562)
chr2 (258-292)||(26542261-26542295)
chr2 (272-390)||(34409429-34409544)
chr2 (162-211)||(32200610-32200659)
[»] chr6 (8 HSPs)
chr6 (162-387)||(19294533-19294744)
chr6 (162-392)||(12844100-12844319)
chr6 (199-322)||(1255435-1255558)
chr6 (254-393)||(14494268-14494405)
chr6 (323-398)||(57188-57265)
chr6 (323-390)||(17540216-17540285)
chr6 (199-350)||(34010991-34011128)
chr6 (199-350)||(34013722-34013859)
[»] scaffold0019 (2 HSPs)
scaffold0019 (235-282)||(69883-69930)
scaffold0019 (323-382)||(69966-70025)
[»] scaffold0002 (1 HSPs)
scaffold0002 (260-322)||(289086-289148)


Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 6 - 382
Target Start/End: Complemental strand, 23432452 - 23432079
Alignment:
Q  6 tttggtgttgtatagtgtctataacctcatctctatattatattttgctttcctctaccactatttttagcaccatcttgctaaaatgtatgtattggtt 105  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23432452 tttggtattgtatagtgtctataacctcatctctatattatattttgctttcctctaccactatttttagcaccatcttgctaaaatgtatgtattggtt 23432353  T
Q  106 cacaaatgtcatcttctctcgtctataatataccttaaattgtttaaattcatgatctatgaagcacataaacctctaggactaaccgtgtcgcggtgtc 205  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  23432352 cacaaatgtcatcttctatcgtctataatataccttaaattgtttaaattcatgatctaagaagcacataaacctctaggactagccgtgtcgcggtgtc 23432253  T
Q  206 cgacactcctatgacatttgtccgacacgtgtcgaacaactaaaatcggtgtcttaaat-aaaattgttttttctttaattcggcactcctaggaccggt 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||        ||||||||||||||||||||||||||||    
T  23432252 cgacactcctatgacatttgtccgacacgtgtcgaacaactaaaatcggtatcttaaataaaaaaaaaaaaatctttaattcggcactcctaggaccggt 23432153  T
Q  305 gtccgacacttatataactaacactcatacgaaccgtgtcggacaactcatataaatatctaaaacattttttctctc 382  Q
    ||||||||||||||    |||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||    
T  23432152 gtccgacacttata----taacactcatacgagccgtgtcggacaactcagataaatatctagaacattttttctctc 23432079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 162 - 398
Target Start/End: Original strand, 48632323 - 48632553
Alignment:
Q  162 ctatgaagcacataaacctctaggactaaccgtgtcgcggtgtccgacactcctatgacatttgtccgacacgtgtcgaacaactaaaatcggtgtctta 261  Q
    |||||||||||  | |||||||||||||  ||||||||||||||||||||||| |||||| | ||  |||||| |||| |||||||| | ||||||| ||    
T  48632323 ctatgaagcacggacacctctaggactaggcgtgtcgcggtgtccgacactcccatgacactcgtatgacacgcgtcggacaactaagaccggtgtccta 48632422  T
Q  262 aataaaattg-ttttttctttaattcggcactcctaggaccggtgtccgacacttatataactaacactcatacgaaccgtgtcggacaactcatataaa 360  Q
    |||||||||| ||||||||||  |||| |||||||| |||||||||||||||| ||      ||||||||| |||| || |||| ||||||||| | |||    
T  48632423 aataaaattgtttttttctttgcttcgacactccta-gaccggtgtccgacaccta------taacactcacacgagccatgtcagacaactcaaacaaa 48632515  T
Q  361 tatctaaaacattttttctctcttgtttccacataccg 398  Q
    | ||| ||||||||||| ||||||| ||| ||| ||||    
T  48632516 tgtctgaaacattttttttctcttggttctacacaccg 48632553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 199 - 395
Target Start/End: Complemental strand, 18488595 - 18488403
Alignment:
Q  199 cggtgtccgacactcctatgacatttgtccgacacgtgtcgaacaactaaaatcggtgtcttaaataaaattgttttttctttaattcggcactcctagg 298  Q
    ||||||||||||||||||||| | |||| |||||  ||||  |||||||| |||||||| | |||||||||  |||||||||||||||| ||||||||||    
T  18488595 cggtgtccgacactcctatgaaaattgttcgacatatgtcagacaactaacatcggtgtatcaaataaaata-ttttttctttaattcgacactcctagg 18488497  T
Q  299 accggtgtccgacacttatataactaacactcatacgaaccgtgtcggacaactcatataaatatctaaaaca--ttttttctctcttgtttccacata 395  Q
    |||||||| |||||| ||||    ||||| |||||||| || |||||||||||||  | |||||| | |||||  |||||||||||||| |||||||||    
T  18488496 accggtgt-cgacacctata----taacattcatacgagccatgtcggacaactctgacaaatatatgaaacattttttttctctcttgcttccacata 18488403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 277
Target Start/End: Complemental strand, 127980 - 127931
Alignment:
Q  228 cgacacgtgtcgaacaactaaaatcggtgtcttaaataaaattgtttttt 277  Q
    |||||||||||| |||| ||| | ||||||| ||||||||||||||||||    
T  127980 cgacacgtgtcggacaaataagaccggtgtcctaaataaaattgtttttt 127931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 393
Target Start/End: Complemental strand, 32741154 - 32741043
Alignment:
Q  279 tttaattcggcactcctaggaccggtgtccgacacttatataactaacactcatacgaaccgtgtcggacaactcatataaatatctaaaaca--ttttt 376  Q
    |||| |||| |||||||| || ||||||||||||| ||||    ||||||| || ||| |||||||  ||||||||   ||||||||||||||  |||||    
T  32741154 tttacttcgacactcctacgatcggtgtccgacac-tata----taacacttatgcgagccgtgtcaaacaactcaggcaaatatctaaaacaatttttt 32741060  T
Q  377 tctctcttgtttccaca 393  Q
    ||||||||| |||||||    
T  32741059 tctctcttgcttccaca 32741043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 2e-50; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 162 - 398
Target Start/End: Complemental strand, 10678717 - 10678484
Alignment:
Q  162 ctatgaagcacataaacctctaggactaaccgtgtcgcggtgtccgacactcctatgacatttgtccgacacgtgtcgaacaactaaaatcggtgtctta 261  Q
    |||||||||||  | |||||||||||||||||||||||||||||||| |||||||| | | ||||||||||||||| | | || ||||||||||||| |     
T  10678717 ctatgaagcacgaacacctctaggactaaccgtgtcgcggtgtccgatactcctataatacttgtccgacacgtgttggaaaattaaaatcggtgtcctg 10678618  T
Q  262 aataaaattgtt-ttttctttaattcggcactcctaggaccggtgtccgacacttatataactaacactcatacgaaccgtgtcggacaactcatataaa 360  Q
    |||||||||||| |||| ||||||||  |||||||||||| |||||||||||| ||||    |||||||||||||||||||||| ||||||||| | |||    
T  10678617 aataaaattgtttttttatttaattcaacactcctaggactggtgtccgacacctata----taacactcatacgaaccgtgtctgacaactcagacaaa 10678522  T
Q  361 tatctaaaacattt-tttctctcttgtttccacataccg 398  Q
    ||| | |||||||| ||| ||||||| ||||||||||||    
T  10678521 tat-ttaaacatttctttttctcttgcttccacataccg 10678484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 194 - 393
Target Start/End: Complemental strand, 27616708 - 27616511
Alignment:
Q  194 tgtcgcggtgtccgacactcctatgacatttgtccgacacgtgtcgaacaactaaaatcggtgtcttaaataaaattgtttt-ttctttaattcggcact 292  Q
    ||||| |||||||||||||| ||||||| | || |||||||||||  |||||||| | ||||||| |||||||| ||||||| |||||||  ||| ||||    
T  27616708 tgtcgtggtgtccgacactcatatgacactcgtacgacacgtgtcagacaactaagaccggtgtcctaaataaatttgttttcttctttacatcgacact 27616609  T
Q  293 cctaggaccggtgtccgacacttatataactaacactcatacgaaccgtgtcggacaactcatataaatatctaaaaca-ttttttctctcttgtttcca 391  Q
    ||||||| ||||||||| ||| ||||    | |||||||||| | ||||||||||||||||| | |||||||| ||||| |||||||||||||| |||||    
T  27616608 cctaggaacggtgtccggcacctata----tgacactcatacaagccgtgtcggacaactcagacaaatatctgaaacatttttttctctcttgcttcca 27616513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 243 - 398
Target Start/End: Original strand, 37338583 - 37338734
Alignment:
Q  243 aactaaaatcggtgtcttaaataaaattgttttttctttaattcggcactcctaggaccggtgtccgacacttatataactaacactcatacgaaccgtg 342  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||| |  ||| ||||  ||||    ||| ||||||||||  ||||    
T  37338583 aactaaattcggtgtcttaaataaaattgttttttctttaattcaacactcctaggactgacgtctgacatctata----taatactcatacgagtcgtg 37338678  T
Q  343 tcggacaactcatataaatatctaaaacattttttctctcttgtttccacataccg 398  Q
     | ||||||||| | |||||||| ||||||||||||||||||| ||||||||||||    
T  37338679 acagacaactcagacaaatatctgaaacattttttctctcttgcttccacataccg 37338734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 177 - 314
Target Start/End: Complemental strand, 46533254 - 46533117
Alignment:
Q  177 acctctaggactaaccgtgtcgcggtgtccgacactcctatgacatttgtccgacacgtgtcgaacaactaaaatcggtgtcttaaataaaattgttttt 276  Q
    ||||||||||||||||| ||||||||||||||||||||| | | | |||| ||| ||||| |  ||||||| ||||| | || |||||||| ||||||||    
T  46533254 acctctaggactaaccgcgtcgcggtgtccgacactcctctaatacttgtacgatacgtgccagacaactacaatcgatatcctaaataaagttgttttt 46533155  T
Q  277 tctttaattcggcactcctaggaccggtgtccgacact 314  Q
     ||||||||||  |||||||| ||||||||||||||||    
T  46533154 cctttaattcgagactcctagaaccggtgtccgacact 46533117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 162 - 242
Target Start/End: Original strand, 44572277 - 44572357
Alignment:
Q  162 ctatgaagcacataaacctctaggactaaccgtgtcgcggtgtccgacactcctatgacatttgtccgacacgtgtcgaac 242  Q
    |||||||||||  | ||||||| |||||  |||||||||||||||||||||||||||||| | || |||||||||||||||    
T  44572277 ctatgaagcacggacacctctacgactaggcgtgtcgcggtgtccgacactcctatgacactcgtacgacacgtgtcgaac 44572357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 272 - 393
Target Start/End: Original strand, 45215868 - 45215989
Alignment:
Q  272 ttttttctttaattcggcactcctaggaccggtgtccgacacttatataactaacactcatacgaaccgtgtcggacaactcatataaatatctaaaaca 371  Q
    ||||||||||| |||| |||||||| || ||||||||||||| |||     |||||||||||||| |||||||||||||| ||   ||||||||||||||    
T  45215868 ttttttctttacttcgtcactcctacgatcggtgtccgacacctat----gtaacactcatacgagccgtgtcggacaacccagtcaaatatctaaaaca 45215963  T
Q  372 ----ttttttctctcttgtttccaca 393  Q
        |||||||||||||| |||||||    
T  45215964 atttttttttctctcttgcttccaca 45215989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 45215790 - 45215848
Alignment:
Q  162 ctatgaagcacataaacctctaggactaaccgtgtcgcggtgtccgacactcctatgac 220  Q
    |||||||||||  | ||||| |||||||  |||||||||||||||||||||||||||||    
T  45215790 ctatgaagcacggacacctccaggactaggcgtgtcgcggtgtccgacactcctatgac 45215848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 393
Target Start/End: Complemental strand, 22291124 - 22291006
Alignment:
Q  272 ttttttctttaattcggcactcctaggaccggtgtccgacacttatataactaacactcatacgaaccgtgtcggacaactcatataaatatctaaaa-c 370  Q
    ||||||||||| |||| |||||||| || |||| |||||||| ||||    || ||||||||||| |||||| |||||||||  | || |||||||||      
T  22291124 ttttttctttacttcgacactcctacgatcggtatccgacacgtata----taccactcatacgagccgtgtaggacaactcgcacaattatctaaaata 22291029  T
Q  371 attttttctctcttgtttccaca 393  Q
    ||||||| ||||||| |||||||    
T  22291028 attttttttctcttgcttccaca 22291006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 341 - 393
Target Start/End: Original strand, 44572428 - 44572481
Alignment:
Q  341 tgtcggacaactcatataaatatctaaaac-attttttctctcttgtttccaca 393  Q
    |||||||||||||| | ||||||||||||| ||||||||||||||| |||||||    
T  44572428 tgtcggacaactcagacaaatatctaaaacaattttttctctcttgcttccaca 44572481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 200 - 277
Target Start/End: Complemental strand, 46014591 - 46014514
Alignment:
Q  200 ggtgtccgacactcctatgacatttgtccgacacgtgtcgaacaactaaaatcggtgtcttaaataaaattgtttttt 277  Q
    ||||||||| |||||||||||| | || ||||| |||||| ||||| || | || |||| ||||||||||||||||||    
T  46014591 ggtgtccgaaactcctatgacactcgtacgacatgtgtcggacaaccaagaccgttgtcctaaataaaattgtttttt 46014514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 277
Target Start/End: Complemental strand, 8799775 - 8799705
Alignment:
Q  207 gacactcctatgacatttgtccgacacgtgtcgaacaactaaaatcggtgtcttaaataaaattgtttttt 277  Q
    ||||| ||||||||| |||| |  ||||||||| |||| ||| | ||||||| ||||||||||||||||||    
T  8799775 gacacgcctatgacacttgtacatcacgtgtcggacaaataagaccggtgtcctaaataaaattgtttttt 8799705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 398
Target Start/End: Original strand, 44182344 - 44182420
Alignment:
Q  323 taacactcatacgaaccgtgtcggacaactcatataaatatctaaaacattttt-tctctcttgtttccacataccg 398  Q
    |||||||||||||| |||||| ||| || | | | |||| |||||||||||||| ||||||||| ||||||| ||||    
T  44182344 taacactcatacgatccgtgttggataatttagacaaatgtctaaaacatttttctctctcttggttccacacaccg 44182420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 6e-50; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 199 - 396
Target Start/End: Original strand, 43921720 - 43921912
Alignment:
Q  199 cggtgtccgacactcctatgacatttgtccgacacgtgtcgaacaactaaaatcggtgtcttaaataaaattg-ttttttctttaattcggcactcctag 297  Q
    ||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||| || ||||||||| |||||||||||||||  |||||||||    
T  43921720 cggtgtccgacactcctatgacacttgtctgacacgtgtcggacaactaaaatcggtgtcctagataaaattgtttttttctttaattcaacactcctag 43921819  T
Q  298 gaccggtgtccgacacttatataactaacactcatacgaaccgtgtcggacaactcatataaatatctaaaaca-ttttttctctcttgtttccacatac 396  Q
    |||||||||||||||| ||      |||||||||| |||||||| |||||||||||| | ||||||||||| || |||||||||||||| ||||||||||    
T  43921820 gaccggtgtccgacaccta------taacactcat-cgaaccgtttcggacaactcagacaaatatctaaagcatttttttctctcttgcttccacatac 43921912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 177 - 384
Target Start/End: Original strand, 10515919 - 10516122
Alignment:
Q  177 acctctaggactaaccgtgtcgcggtgtccgacactcctatgacatttgtccgacacgtgtcgaacaactaaaatcggtgtcttaaataaaattgttttt 276  Q
    ||||||| |||||  ||| ||||||||||||| |||||||||||| |||||||| |||||| | |||||||||||| |||||||||||||||||||||||    
T  10515919 acctctatgactagtcgtatcgcggtgtccgagactcctatgacacttgtccgatacgtgttggacaactaaaatcagtgtcttaaataaaattgttttt 10516018  T
Q  277 tctttaattcggcactcctaggaccggtgtccgacacttatataactaacactcatacgaaccgtgtcggacaactcatataaatatctaaaacattttt 376  Q
    ||||| ||||| |||| |||||  ||||||||||||| | ||    ||| ||||||||||  |||||| ||||||||||  |||||||||||| ||||||    
T  10516019 tctttgattcgacacttctagggtcggtgtccgacacctgta----taatactcatacgagtcgtgtcagacaactcatgcaaatatctaaaatattttt 10516114  T
Q  377 tctctctt 384  Q
    ||||||||    
T  10516115 tctctctt 10516122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 201 - 398
Target Start/End: Complemental strand, 11411070 - 11410875
Alignment:
Q  201 gtgtccgacactcctatgacatttgtccgacacgtgtcgaacaactaaaatcggtgtcttaaataaa--attgttttttctttaattcggcactcctagg 298  Q
    ||||||||||||||||||||| ||||| ||||| ||||| ||||||||||||| |||| ||||||||  ||| ||||||  |||||||| ||||||||||    
T  11411070 gtgtccgacactcctatgacacttgtctgacacatgtcggacaactaaaatcgatgtcctaaataaaatatttttttttacttaattcgacactcctagg 11410971  T
Q  299 accggtgtccgacacttatataactaacactcatacgaaccgtgtcggacaactcatataaatatctaaaaca-ttttttctctcttgtttccacatacc 397  Q
    |||||||| |||||| ||||    |||||||||||||| || |||| ||||||| ||  ||||||| |||||| |||||||||||||  |||||||||||    
T  11410970 accggtgt-cgacacctata----taacactcatacgagccatgtcagacaacttatgcaaatatcgaaaacatttttttctctcttacttccacatacc 11410876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 323 - 395
Target Start/End: Complemental strand, 26565568 - 26565495
Alignment:
Q  323 taacactcatacgaaccgtgtcggacaactcatataaatatctaaaacatt-ttttctctcttgtttccacata 395  Q
    |||||||||||||| ||||||||||||||||| | |||||||||||||||| |||||||||||| |||||||||    
T  26565568 taacactcatacgagccgtgtcggacaactcagacaaatatctaaaacatttttttctctcttgcttccacata 26565495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 327 - 395
Target Start/End: Original strand, 21408750 - 21408819
Alignment:
Q  327 actcatacgaaccgtgtcggacaactcatataaatatctaaaaca-ttttttctctcttgtttccacata 395  Q
    |||||||||| ||||||||||||||||| | |||||||||||||| |||||||||||||| |||||||||    
T  21408750 actcatacgagccgtgtcggacaactcaaacaaatatctaaaacatttttttctctcttgcttccacata 21408819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 323 - 383
Target Start/End: Original strand, 10657332 - 10657392
Alignment:
Q  323 taacactcatacgaaccgtgtcggacaactcatataaatatctaaaacattttttctctct 383  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||| ||||||| |||||    
T  10657332 taacactcatacgagccgtgtcagacaactcatataaatatctaaaatattttttttctct 10657392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 160 - 313
Target Start/End: Original strand, 25092124 - 25092278
Alignment:
Q  160 atctatgaagcacataaacctctaggactaaccgtgtcgcggtgtccgacactcctatgacatttgtccgacacgtgtcgaacaactaaaatcggtgtct 259  Q
    |||||||||||||  | |||||||||||||   ||||||| ||||| |||||| |||||||| | || | |||||||||| ||||| || |  ||||||     
T  25092124 atctatgaagcacggacacctctaggactaggtgtgtcgcagtgtctgacacttctatgacactcgtacaacacgtgtcggacaaccaagactggtgtcc 25092223  T
Q  260 taaataaaat--tgttttttctttaattcggcactcctaggaccggtgtccgacac 313  Q
    ||||||||||  | ||||||||||| |||| ||||| || |||||||||| |||||    
T  25092224 taaataaaataattttttttctttacttcgacactctta-gaccggtgtctgacac 25092278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 157 - 322
Target Start/End: Complemental strand, 49861370 - 49861215
Alignment:
Q  157 atgatctatgaagcacataaacctctaggactaaccgtgtcgcggtgtccgacactcctatgacatttgtccgacacgtgtcgaacaactaaaatcggtg 256  Q
    ||||||||||||||||| | |||||||||||||   |||||||||| |||||||||| |||           ||||||||||| |||||||  |  ||||    
T  49861370 atgatctatgaagcacagacacctctaggactaggggtgtcgcggtttccgacactcgtat-----------gacacgtgtcggacaactaggactggtg 49861282  T
Q  257 tcttaaataaaattg-ttttttctttaattcggcactcctaggaccggtgtccgacacttatataac 322  Q
     | |||||||||||| ||||||||| | ||||  |||||||||||||||||| ||||| ||||||||    
T  49861281 acctaaataaaattgtttttttcttaacttcgaaactcctaggaccggtgtctgacacctatataac 49861215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 393
Target Start/End: Original strand, 17715644 - 17715809
Alignment:
Q  228 cgacacgtgtcgaacaactaaaatcggtgtcttaaataaaattg--ttttttctttaattcggcactcctaggaccggtgtccgacacttatataactaa 325  Q
    |||||||||||| |||||||| || | |||  ||||||||||||  ||||||||||| || | |||||||| || ||||||| ||||| ||||    |||    
T  17715644 cgacacgtgtcggacaactaagattgatgttctaaataaaattgtattttttctttactttgacactccta-gatcggtgtctgacacctata----taa 17715738  T
Q  326 cactcatacgaaccgtgtcggacaactcatataaatatctaaaacattt---tttctctcttgtttccaca 393  Q
    ||||||||| | |  ||| |||||||||| | |||| ||| ||||||||   ||||||||||| |||||||    
T  17715739 cactcatacaagcattgttggacaactcaaacaaatgtctgaaacatttttatttctctcttggttccaca 17715809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 393
Target Start/End: Original strand, 19016873 - 19017038
Alignment:
Q  228 cgacacgtgtcgaacaactaaaatcggtgtcttaaataaaattg--ttttttctttaattcggcactcctaggaccggtgtccgacacttatataactaa 325  Q
    |||||||||||| |||||||| || | |||  ||||||||||||  ||||||||||| || | |||||||| || ||||||| ||||| ||||    |||    
T  19016873 cgacacgtgtcggacaactaagattgatgttctaaataaaattgtattttttctttactttgacactccta-gatcggtgtctgacacctata----taa 19016967  T
Q  326 cactcatacgaaccgtgtcggacaactcatataaatatctaaaacattt---tttctctcttgtttccaca 393  Q
    ||||||||| | |  ||| |||||||||| | |||| ||| ||||||||   ||||||||||| |||||||    
T  19016968 cactcatacaagcattgttggacaactcaaacaaatgtctgaaacatttttatttctctcttggttccaca 19017038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 277
Target Start/End: Original strand, 27109536 - 27109583
Alignment:
Q  230 acacgtgtcgaacaactaaaatcggtgtcttaaataaaattgtttttt 277  Q
    ||||||||||||||| |||||| |||||  ||||||||||||||||||    
T  27109536 acacgtgtcgaacaattaaaattggtgttctaaataaaattgtttttt 27109583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 9e-43; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 162 - 398
Target Start/End: Complemental strand, 40838326 - 40838093
Alignment:
Q  162 ctatgaagcacataaacctctaggactaaccgtgtcgcggtgtccgacactcctatgacatttgtccgacacgtgtcgaacaactaaaatcggtgtctta 261  Q
    |||||||||||  | || |||||| | | ||||||||||||||||||||||| |||||||||||||||||| |||| | | ||| |||||| ||||| ||    
T  40838326 ctatgaagcacggacacttctaggtcaagccgtgtcgcggtgtccgacactcgtatgacatttgtccgacatgtgttggaaaaccaaaatcagtgtccta 40838227  T
Q  262 aataaaattgttttttctttaattcggcactcctaggaccggtgtccgacacttatataactaacactcatacgaaccgtgtcggacaactcatataaat 361  Q
    ||||||||||||||||  |||||||| ||||| | ||||||||||||||||  ||||    |||||||||||| |  |||||||||||||||| | ||||    
T  40838226 aataaaattgttttttagttaattcgacactctttggaccggtgtccgacatctata----taacactcatacaagtcgtgtcggacaactcagacaaat 40838131  T
Q  362 atctaaaacattttttct-ctcttgtttccacataccg 398  Q
     ||||||||||||||| | |||||| ||||| ||||||    
T  40838130 gtctaaaacattttttttcctcttgcttccagataccg 40838093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 193 - 306
Target Start/End: Original strand, 32676415 - 32676528
Alignment:
Q  193 gtgtcgcggtgtccgacactcctatgacatttgtccgacacgtgtcgaacaactaaaatcggtgtcttaaataaaattgttttttctttaattcggcact 292  Q
    ||||||| ||||||||||||||||||||| |||| |||||||||| | ||| |||  | || |||| ||||||||||||||||||||||| |||| ||||    
T  32676415 gtgtcgccgtgtccgacactcctatgacacttgtacgacacgtgttggacagctatgaccgatgtcctaaataaaattgttttttctttacttcgacact 32676514  T
Q  293 cctaggaccggtgt 306  Q
    ||||||||||||||    
T  32676515 cctaggaccggtgt 32676528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 36772270 - 36772322
Alignment:
Q  21 tgtctataacctcatctctatattatattttgctttcctctaccactattttt 73  Q
    ||||||||| ||||| | ||||||||||||||||||||||||  |||||||||    
T  36772270 tgtctataaactcatgtatatattatattttgctttcctctataactattttt 36772322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 21138980 - 21139041
Alignment:
Q  13 ttgtatagtgtctataacctc-atctctatattatattttgctttcctctaccactattttt 73  Q
    ||||||||| ||||||| ||| |||| |||||||| ||||||||||||| || |||||||||    
T  21138980 ttgtatagtatctataaactctatctttatattatgttttgctttcctcaacaactattttt 21139041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 8e-34; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 210 - 395
Target Start/End: Complemental strand, 17733152 - 17732969
Alignment:
Q  210 actcctatgacatttgtccgacacgtgtcgaacaactaaaatcggtgtcttaaataaaattgttttttctttaattcggcactcctaggaccggtgtccg 309  Q
    |||||||||| | |||| |||||||||||  ||||||||||||||||||| |||||||||  |||||||||||||||| |||||||||||||||||| ||    
T  17733152 actcctatgaaacttgttcgacacgtgtcagacaactaaaatcggtgtctcaaataaaatatttttttctttaattcgacactcctaggaccggtgt-cg 17733054  T
Q  310 acacttatataactaacactcatacgaaccgtgtcggacaactcatataaatatctaaaaca---ttttttctctcttgtttccacata 395  Q
    |||| | ||    ||||| |||||||| ||||||||||||||||  | |||||| | |||||   |||||||||||||| |||||||||    
T  17733053 acacctcta----taacattcatacgagccgtgtcggacaactctgacaaatatatgaaacatttttttttctctcttgcttccacata 17732969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 273 - 393
Target Start/End: Original strand, 40289002 - 40289118
Alignment:
Q  273 tttttctttaattcggcactcctaggaccggtgtccgacacttatataactaacactcatacgaaccgtgtcggacaactcatataaatatctaaaacat 372  Q
    |||||||||| |||| |||||||| || ||||||||||||| ||||||||    ||||||||||  | |||||||||||||| | |||||||||||||||    
T  40289002 tttttctttacttcgacactcctacgatcggtgtccgacacctatataac----actcatacgagtcatgtcggacaactcaaacaaatatctaaaacat 40289097  T
Q  373 tttttctctcttgtttccaca 393  Q
    ||||||||||||| |||||||    
T  40289098 tttttctctcttgcttccaca 40289118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 199 - 318
Target Start/End: Original strand, 658249 - 658369
Alignment:
Q  199 cggtgtccgacactcctatgacatttgtccgacacgtgtcgaacaactaaaatcggtgtcttaaataaaattg--ttttttctttaattcggcactccta 296  Q
    |||||||||||||| |||||||| |||| |||||||||||| | ||| || | | ||||| ||||||||||||  ||||||||||| |||| ||||||||    
T  658249 cggtgtccgacacttctatgacacttgtacgacacgtgtcggataaccaagaccagtgtcctaaataaaattgttttttttctttacttcgacactccta 658348  T
Q  297 ggaccggtgtccgacacttata 318  Q
     || ||||||||||||| ||||    
T  658349 -gaacggtgtccgacacctata 658369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 177 - 383
Target Start/End: Complemental strand, 54306020 - 54305826
Alignment:
Q  177 acctctaggactaaccgtgtcgcggtgtccgacactcctatgacatttgtccgacacgtgtcgaacaactaaaatcggtgtcttaaataaaattgttttt 276  Q
    |||||||||||||  |||||| |||||||||||||||||||||||   || |||||||||||||||         || |||| |||||||   | ||||     
T  54306020 acctctaggactaggcgtgtcacggtgtccgacactcctatgacacccgtacgacacgtgtcgaac---------cgatgtcctaaataattgttttttg 54305930  T
Q  277 tctttaattcggcactcctaggaccggtgtccgacacttatataactaacactcatacgaaccgtgtcggacaactcatataaatatctaaaac-atttt 375  Q
    |||||| |||| ||||||||  | |||||||| |||| ||||     ||||||||||||| ||||||| ||||||||| | ||||||||||||| |||||    
T  54305929 tctttacttcgacactcctacaatcggtgtccaacacctata----caacactcatacgagccgtgtcagacaactcacacaaatatctaaaacaatttt 54305834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 377
Target Start/End: Original strand, 45612284 - 45612385
Alignment:
Q  272 ttttttctttaattcggcactcctaggaccggtgtccgacacttatataactaacactcatacgaaccgtgtcggacaactcatataaatatctaaaaca 371  Q
    |||||||||||  ||| |||||||| || || |||||||||| | ||    ||||||||||||||  |||||||||||||||| | ||||||||||||||    
T  45612284 ttttttctttacgtcgacactcctacgatcgatgtccgacacctgta----taacactcatacgagtcgtgtcggacaactcaaacaaatatctaaaaca 45612379  T
Q  372 tttttt 377  Q
     |||||    
T  45612380 attttt 45612385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 31734806 - 31734739
Alignment:
Q  161 tctatgaagcacataaacctctaggactaaccgtgtcgcggtgtccgacactcctatgacatttgtcc 228  Q
    ||||||||||||  |||||| ||||| || ||||||| ||||||||||||||| ||||||| ||||||    
T  31734806 tctatgaagcacggaaacctttaggattagccgtgtcacggtgtccgacactcttatgacacttgtcc 31734739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 385
Target Start/End: Complemental strand, 29987938 - 29987876
Alignment:
Q  323 taacactcatacgaaccgtgtcggacaactcatataaatatctaaaacattttttctctcttg 385  Q
    ||||||||||||||   |||| |||||||||| | |||||||||||||||||||| |||||||    
T  29987938 taacactcatacgagatgtgttggacaactcaaacaaatatctaaaacattttttttctcttg 29987876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 162 - 241
Target Start/End: Complemental strand, 3420210 - 3420131
Alignment:
Q  162 ctatgaagcacataaacctctaggactaaccgtgtcgcggtgtccgacactcctatgacatttgtccgacacgtgtcgaa 241  Q
    |||||||||||  | ||||||| |||||  ||||| |||||||| ||||||| ||||||| | || ||||||||||||||    
T  3420210 ctatgaagcacggacacctctaagactaggcgtgttgcggtgtctgacactcttatgacaatcgtacgacacgtgtcgaa 3420131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 199 - 242
Target Start/End: Complemental strand, 55681059 - 55681016
Alignment:
Q  199 cggtgtccgacactcctatgacatttgtccgacacgtgtcgaac 242  Q
    ||||||||||||||||||||||| |||| |||||| ||||||||    
T  55681059 cggtgtccgacactcctatgacacttgtacgacacatgtcgaac 55681016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 322
Target Start/End: Original strand, 18198649 - 18198711
Alignment:
Q  260 taaataaaattgttttttctttaattcggcactcctaggaccggtgtccgacacttatataac 322  Q
    |||||| |||||||||||||||| | || |||||||   ||||||||||||||| ||||||||    
T  18198649 taaatacaattgttttttctttactccgacactccttacaccggtgtccgacacctatataac 18198711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 199 - 322
Target Start/End: Original strand, 15850239 - 15850362
Alignment:
Q  199 cggtgtccgacactcctatgacatttgtccgacacgtgtcgaacaactaaaatcggtgtcttaaataaaattgttttttctttaattcggcactcctagg 298  Q
    ||||||||||||||||||||||| | || |||||||| ||  |||||||||||||||||| |||||||||||||||||||||||||||  ||||| || |    
T  15850239 cggtgtccgacactcctatgacactcgtacgacacgtatcagacaactaaaatcggtgtcctaaataaaattgttttttctttaattcaacactcttaag 15850338  T
Q  299 accggtgtccgacacttatataac 322  Q
    ||||||||| ||||| ||||||||    
T  15850339 accggtgtctgacacctatataac 15850362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 224 - 396
Target Start/End: Original strand, 18602871 - 18603038
Alignment:
Q  224 tgtccgacacgtgtcgaacaactaaaatcggtgtcttaaataaaattg-ttttttctttaattcggcactcctaggaccggtgtccgacacttatataac 322  Q
    |||| ||||||||||| |||||||||||||||||| |||||||||||| |||||||||| ||||| |||||||| |||||||||||||||| ||          
T  18602871 tgtctgacacgtgtcggacaactaaaatcggtgtcctaaataaaattgtttttttctttgattcgacactcctaagaccggtgtccgacaccta------ 18602964  T
Q  323 taacactcatacgaaccgtgtcggacaactcatataaatatctaaaaca-ttttttctctcttgtttccacatac 396  Q
    ||| |||||| ||||| || |||||||||||| | ||||||||||| || |||||||||||||| ||||||||||    
T  18602965 taaaactcat-cgaactgtttcggacaactcagacaaatatctaaagcatttttttctctcttgcttccacatac 18603038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 272 - 377
Target Start/End: Original strand, 15131813 - 15131914
Alignment:
Q  272 ttttttctttaattcggcactcctaggaccggtgtccgacacttatataactaacactcatacgaaccgtgtcggacaactcatataaatatctaaaaca 371  Q
    ||||||||||| |||| |||||||| |||||||||||||||| ||||    ||||||||||| || | |||||| |||||||| | |||||||||||  |    
T  15131813 ttttttctttacttcgacactcctacgaccggtgtccgacacctata----taacactcatatgagcagtgtcgaacaactcagacaaatatctaaacaa 15131908  T
Q  372 tttttt 377  Q
    ||||||    
T  15131909 tttttt 15131914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 15131734 - 15131783
Alignment:
Q  162 ctatgaagcacataaacctctaggactaaccgtgtcgcggtgtccgacac 211  Q
    |||||||||||  | |||||||||||||  ||||||||||||||||||||    
T  15131734 ctatgaagcacggacacctctaggactaggcgtgtcgcggtgtccgacac 15131783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 354
Target Start/End: Complemental strand, 31772742 - 31772664
Alignment:
Q  272 ttttttctttaattcggcactcctaggaccggtgtccgacacttatataactaacactcatacgaaccgtgtcggacaactca 354  Q
    ||||||||||| |||| || | || |||||||||||||| || ||||||||    ||||||||||  ||||||||||||||||    
T  31772742 ttttttctttacttcgacagttcttggaccggtgtccgatacctatataac----actcatacgagacgtgtcggacaactca 31772664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 162 - 383
Target Start/End: Complemental strand, 26576478 - 26576269
Alignment:
Q  162 ctatgaagcacataaacctctaggactaaccgtgtcgcggtgtccgacactcctatgacatttgtccgacacgtgtcgaacaactaaaatcggtgtctta 261  Q
    |||||||||||  | |||||||||||||  ||||||||||||||||||||||||||||||   || |||||||||||||||         ||||||||||    
T  26576478 ctatgaagcacggacacctctaggactagacgtgtcgcggtgtccgacactcctatgacacccgtacgacacgtgtcgaac---------cggtgtctta 26576388  T
Q  262 aataaaattg-ttttttctttaattcggcactcctaggaccggtgtccgacacttatataactaacactcatacgaaccgtgtcggacaactcatataaa 360  Q
    |||  ||||| ||||||||||| || | |||||||| || |||| ||| |||| ||||    |||||||||||||| ||||||||||||||||| | |||    
T  26576387 aat--aattgattttttctttactttgacactcctacgatcggtctccaacacctata----taacactcatacgagccgtgtcggacaactcaaacaaa 26576294  T
Q  361 tatctaaaac--attttttctctct 383  Q
    ||| ||||||  |||||||||||||    
T  26576293 tatttaaaacaaattttttctctct 26576269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 272 - 383
Target Start/End: Original strand, 32200688 - 32200796
Alignment:
Q  272 ttttttctttaattcggcactcctaggaccggtgtccgacacttatataactaacactcatacgaaccgtgtcggacaactcatataaatatctaaaac- 370  Q
    ||||||||||| |||| |||||||| || ||||| || |||| ||||||||    | |||||||| ||||||||||||||||| | |||||||||||||     
T  32200688 ttttttctttacttcgacactcctacgatcggtgcccaacacctatataac----agtcatacgagccgtgtcggacaactcagaaaaatatctaaaaca 32200783  T
Q  371 attttttctctct 383  Q
    |||||||||||||    
T  32200784 attttttctctct 32200796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 160 - 322
Target Start/End: Original strand, 15989802 - 15989964
Alignment:
Q  160 atctatgaagcacataaacctctaggactaaccgtgtcgcggtgtccgacactcctatgacatttgtccgacacgtgtcgaacaactaaaatcggtgtct 259  Q
    |||||||||||||  | |||||| ||||||  ||||| || |||||| |||||||||||||| |  | |||||| ||||| |||||||| | || ||||     
T  15989802 atctatgaagcacgaacacctcttggactagacgtgttgcagtgtccaacactcctatgacactcttacgacacatgtcggacaactaagaccgatgtcc 15989901  T
Q  260 taaataaaatt-gttttttctttaattcggcactcctaggaccggtgtccgacacttatataac 322  Q
    |||||||||||  ||||| |||||  ||| ||||||||  | ||||||| ||||||||||||||    
T  15989902 taaataaaattaatttttcctttacatcgacactccta-catcggtgtctgacacttatataac 15989964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 162 - 248
Target Start/End: Original strand, 4747817 - 4747903
Alignment:
Q  162 ctatgaagcacataaacctctaggactaaccgtgtcgcggtgtccgacactcctatgacatttgtccgacacgtgtcgaacaactaa 248  Q
    |||||||||||  | |||||||||||||  ||||||| ||||||||||| |||||||||| |||| || || |||||| ||||||||    
T  4747817 ctatgaagcacggacacctctaggactaggcgtgtcgtggtgtccgacaatcctatgacacttgtacggcatgtgtcggacaactaa 4747903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 318
Target Start/End: Original strand, 44649803 - 44649870
Alignment:
Q  250 atcggtgtcttaaataaaattgttttttctttaattcggcactcctaggaccggtgtccgacacttata 318  Q
    |||| |||| ||||||||||||||||||||||| |||| ||||| || ||||||||||| |||| ||||    
T  44649803 atcgatgtcctaaataaaattgttttttctttacttcgacactctta-gaccggtgtcccacacatata 44649870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 322
Target Start/End: Complemental strand, 17651562 - 17651516
Alignment:
Q  276 ttctttaattcggcactcctaggaccggtgtccgacacttatataac 322  Q
    ||||||| |||| |||||||  |||||||||||||||||||||||||    
T  17651562 ttctttacttcgacactcctttgaccggtgtccgacacttatataac 17651516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 292
Target Start/End: Complemental strand, 26542295 - 26542261
Alignment:
Q  258 cttaaataaaattgttttttctttaattcggcact 292  Q
    |||||||||||||||||||||||||||||| ||||    
T  26542295 cttaaataaaattgttttttctttaattcgacact 26542261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 390
Target Start/End: Original strand, 34409429 - 34409544
Alignment:
Q  272 ttttttctttaattcggcactcctaggaccggtgtccgacacttatataactaacactcatacgaaccgtgtcggacaactcatataaatatctaaaac- 370  Q
    ||||||||||| |||| ||| |||| || ||||||||||||| ||||    ||||||||||||||   |||| | |||||||| | || ||||||||||     
T  34409429 ttttttctttacttcgacacgcctatgatcggtgtccgacacctata----taacactcatacgagttgtgttgaacaactcaaacaactatctaaaaca 34409524  T
Q  371 attttttctctcttgtttcc 390  Q
    ||||| ||||||||| ||||    
T  34409525 attttctctctcttgattcc 34409544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 32200610 - 32200659
Alignment:
Q  162 ctatgaagcacataaacctctaggactaaccgtgtcgcggtgtccgacac 211  Q
    |||||||||||  | |||||||||||||  ||||||||||||||||||||    
T  32200610 ctatgaagcacggacacctctaggactaggcgtgtcgcggtgtccgacac 32200659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 7e-25; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 162 - 387
Target Start/End: Complemental strand, 19294744 - 19294533
Alignment:
Q  162 ctatgaagcacataaacctctaggactaaccgtgtcgcggtgtccgacactcctatgacatttgtccgacacgtgtcgaacaactaaaatcggtgtctta 261  Q
    |||||||||||  | |||||||||| ||  |||||||||||||||||||||||| |||||   || |||||||||||||||         |||||||  |    
T  19294744 ctatgaagcaccgacacctctaggattaggcgtgtcgcggtgtccgacactcctgtgacacccgtacgacacgtgtcgaac---------cggtgtccaa 19294654  T
Q  262 aataaaattgtttttt-ctttaattcggcactcctaggaccggtgtccgacacttatataactaacactcatacgaaccgtgtcggacaactcatataaa 360  Q
    |||||  ||||||||| ||||| |||| ||||| || || ||||||||||||| | ||    |||||||||||||| ||||||||||||| ||| | |||    
T  19294653 aataa--ttgtttttttctttacttcgacactcttacgatcggtgtccgacacctgta----taacactcatacgagccgtgtcggacaagtcacacaaa 19294560  T
Q  361 tatctaaaacattttttctctcttgtt 387  Q
    ||||||||||| |||||||||||||||    
T  19294559 tatctaaaacaatttttctctcttgtt 19294533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 162 - 392
Target Start/End: Complemental strand, 12844319 - 12844100
Alignment:
Q  162 ctatgaagcacataaacctctaggactaaccgtgtcgcggtgtccgacactcctatgacatttgtccgacacgtgtcgaacaactaaaatcggtgtctta 261  Q
    |||||||||||  | |||||||| ||||  | |||||||||||||||||||||||| |||  ||| |||||||||||||||         ||||||| ||    
T  12844319 ctatgaagcacggacacctctagaactaggcatgtcgcggtgtccgacactcctataacacctgtacgacacgtgtcgaac---------cggtgtccta 12844229  T
Q  262 aataaaattgttttttctttaattcggcactcctaggaccggtgtccgacacttatataactaacactcatacgaaccgtgtcggacaactcatataaat 361  Q
    |||||  | |||||||||||| |||| |||||||| || || |||| ||||||||||    |||||||||||||| | ||||| ||||||||| | | ||    
T  12844228 aataat-tggttttttctttacttcgacactcctaagatcgatgtctgacacttata----taacactcatacgagctgtgtcagacaactcacacagat 12844134  T
Q  362 atctaaaac---attttttctctcttgtttccac 392  Q
    |||||||||   ||||||||||||||| ||||||    
T  12844133 atctaaaacaatattttttctctcttgcttccac 12844100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 199 - 322
Target Start/End: Original strand, 1255435 - 1255558
Alignment:
Q  199 cggtgtccgacactcctatgacatttgtccgacacgtgtcgaacaactaaaatcggtgtcttaaataaaattgttttttctttaattcggcactcctagg 298  Q
    |||||||| |||||| | ||||| | ||  ||||||||||  |||||||||||||| |||||||||||| || |||||||||||||||| |||||||||     
T  1255435 cggtgtccaacactcatgtgacactcgtatgacacgtgtcagacaactaaaatcggcgtcttaaataaagttattttttctttaattcgacactcctaga 1255534  T
Q  299 accggtgtccgacacttatataac 322  Q
    ||  || || ||||| ||||||||    
T  1255535 actagtatctgacacctatataac 1255558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 254 - 393
Target Start/End: Original strand, 14494268 - 14494405
Alignment:
Q  254 gtgtcttaaataaaattgttttttctttaattcggcactcctaggaccggtgtccgacacttatataactaacactcatacgaaccgtgtcggacaactc 353  Q
    |||||||||||||   | ||||||||||| |||| ||||||||  | ||||||||||||| ||||    ||||||| |||||| ||||||||||||||||    
T  14494268 gtgtcttaaataattgttttttttctttacttcgacactcctacaatcggtgtccgacacctata----taacactaatacgagccgtgtcggacaactc 14494363  T
Q  354 atataaatatctaaaaca--ttttttctctcttgtttccaca 393  Q
    | | |||||||| |||||  | |||||||| |||||||||||    
T  14494364 acacaaatatcttaaacaattgttttctctattgtttccaca 14494405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 323 - 398
Target Start/End: Complemental strand, 57265 - 57188
Alignment:
Q  323 taacactcatacgaaccgtgtcggacaactcatataaatatctaaaacat--tttttctctcttgtttccacataccg 398  Q
    |||||||||||||| ||||||||||||||| | |||||||||||||  ||  ||||||||||||| ||||||||||||    
T  57265 taacactcatacgagccgtgtcggacaactaagataaatatctaaattattatttttctctcttgcttccacataccg 57188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 323 - 390
Target Start/End: Complemental strand, 17540285 - 17540216
Alignment:
Q  323 taacactcatacgaaccgtgtcggacaactcatataaatatctaaaaca--ttttttctctcttgtttcc 390  Q
    ||||||||||| |||||||||||||||||||| | ||||||||||||||  |||||||||||||| ||||    
T  17540285 taacactcatatgaaccgtgtcggacaactcagacaaatatctaaaacaatttttttctctcttgcttcc 17540216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 350
Target Start/End: Original strand, 34010991 - 34011128
Alignment:
Q  199 cggtgtccgacactcctatgacatttgtccgacacgtgtcgaacaactaaaatcggtgtcttaaataaaattg-ttttttctttaattcggcactcctag 297  Q
    |||||||||||||||| |||||| |||| |||||||||||||||         ||||||| |||||  ||||| ||||||||||| |||| ||||||||     
T  34010991 cggtgtccgacactccaatgacacttgtgcgacacgtgtcgaac---------cggtgtcctaaat--aattgtttttttctttacttcgacactcctac 34011079  T
Q  298 gaccggtgtccgacacttatataactaacactcatacgaaccgtgtcggacaa 350  Q
    ||  |||||||||||| ||||    |||||||||||||| ||||||| |||||    
T  34011080 gattggtgtccgacacctata----taacactcatacgagccgtgtcagacaa 34011128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 350
Target Start/End: Complemental strand, 34013859 - 34013722
Alignment:
Q  199 cggtgtccgacactcctatgacatttgtccgacacgtgtcgaacaactaaaatcggtgtcttaaataaaattg-ttttttctttaattcggcactcctag 297  Q
    |||||||||||||||| |||||| |||| |||||||||||||||         ||||||| |||||  ||||| ||||||||||| |||| ||||||||     
T  34013859 cggtgtccgacactccaatgacacttgtacgacacgtgtcgaac---------cggtgtcctaaat--aattgtttttttctttacttcgacactcctac 34013771  T
Q  298 gaccggtgtccgacacttatataactaacactcatacgaaccgtgtcggacaa 350  Q
    ||  |||||||||||| ||||    |||||||||||||| ||||||| |||||    
T  34013770 gattggtgtccgacacctata----taacactcatacgagccgtgtcagacaa 34013722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 235 - 282
Target Start/End: Original strand, 69883 - 69930
Alignment:
Q  235 tgtcgaacaactaaaatcggtgtcttaaataaaattgttttttcttta 282  Q
    |||||||||| || ||||| | ||||||||||||||||||||||||||    
T  69883 tgtcgaacaattataatcgatatcttaaataaaattgttttttcttta 69930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 323 - 382
Target Start/End: Original strand, 69966 - 70025
Alignment:
Q  323 taacactcatacgaaccgtgtcggacaactcatataaatatctaaaacattttttctctc 382  Q
    ||||||||||| ||  |||||||||||||||| |||||| ||  ||||||||||||||||    
T  69966 taacactcatatgagtcgtgtcggacaactcaaataaatgtcataaacattttttctctc 70025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 322
Target Start/End: Complemental strand, 289148 - 289086
Alignment:
Q  260 taaataaaattgttttttctttaattcggcactcctaggaccggtgtccgacacttatataac 322  Q
    |||||| |||||||||||||||| | || |||||||   ||||||||||||||| ||||||||    
T  289148 taaatacaattgttttttctttactccgacactccttacaccggtgtccgacacctatataac 289086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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