View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9967_high_4 (Length: 256)
Name: NF9967_high_4
Description: NF9967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9967_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 16087686 - 16087447
Alignment:
| Q |
1 |
tgtggattacttactatgtcatcttttgataaactttaattagtgaaatattattttaaacttggttctcatgaatatatgatatttatagtgggagaat |
100 |
Q |
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| T |
16087686 |
tgtggattacttactatgtcatcttttgataaactttaattagtgaaatattattttaaacttggttctcatgaatatatgatatttatagtgggagaat |
16087587 |
T |
|
| Q |
101 |
tcctttttaacaattttgtgtgtgtataaatgagaactatgatagcatcttagaagttagaatactttaaacttaatcatcatgagctgaagtagtgatt |
200 |
Q |
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| T |
16087586 |
tcctttttaacaattttgtgtgtgtataaatgagaactatgatagcatcttagaagttagaatactttaaacttaatcatcatgagctgaagtagtgatt |
16087487 |
T |
|
| Q |
201 |
catgtaatattgttttgagctattttcttatgtctttaat |
240 |
Q |
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| T |
16087486 |
catgtaatattgttttgagctattttcttatgtctttaat |
16087447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 38643172 - 38643027
Alignment:
| Q |
1 |
tgtggattacttactatgtcatcttttgataaactttaatt-agtgaaatattattttaaacttggttctcatgaatatatgatatttatagtgggagaa |
99 |
Q |
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| T |
38643172 |
tgtggaatacttactatgtcat-ttttgataaagtttaatttagtgaaatattattttagtcttggttctcatgaatatgtgatatttatagtaggagaa |
38643074 |
T |
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| Q |
100 |
ttcctttttaacaattt------tgtgtgtgtataaatgagaactat |
140 |
Q |
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| T |
38643073 |
ttcctttttaacatttttttttgtgtgtgtgtataaatgagaactat |
38643027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 139
Target Start/End: Original strand, 19974422 - 19974514
Alignment:
| Q |
46 |
aaatattattttaaacttggttctcatgaatatatgatatttatagtgggagaattcctttttaacaattttgtgtgtgtataaatgagaacta |
139 |
Q |
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|||||||| |||||| ||||| ||||||| ||| || |||||| ||||||||||||| |||||||| ||||| ||||||||| |||||| |||| |
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| T |
19974422 |
aaatattaatttaaatttggtgctcatgagtatgtggtatttacagtgggagaattcttttttaacgatttt-tgtgtgtatgaatgaggacta |
19974514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 53838144 - 53838100
Alignment:
| Q |
136 |
actatgatagcatcttagaagttagaatactttaaacttaatcat |
180 |
Q |
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| T |
53838144 |
actatgatagcatcttagaagttagaataccttaagcttaatcat |
53838100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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