View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9967_low_1 (Length: 508)
Name: NF9967_low_1
Description: NF9967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9967_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 6 - 492
Target Start/End: Original strand, 24292517 - 24293003
Alignment:
| Q |
6 |
ggtgtttacatggcttgcatttgtctattatgtgtgtattagtcaatggtatcatttatctcgttcaattggtttgcagggacctttagccttttataag |
105 |
Q |
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| T |
24292517 |
ggtgtttacatggcttgcatttgtctattatgtgtgtattagtcaatggtatcatttatctcgttcaattggtttgcagggacctttagccttttataag |
24292616 |
T |
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| Q |
106 |
gggttcataccaaatttcggacggctaggatcgtggaatgtgatcatgtttttaacactagaacaggtatgagttgggtactttgtgatagcttttgagt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24292617 |
gggttcataccaaatttcggacggctaggatcgtggaatgtgatcatgtttttaacactagaacaggtatgagttgggtactttgtgatagcttttgagt |
24292716 |
T |
|
| Q |
206 |
catcatccattactttttgtcacaccctatctcatggatttctagattattttataacatataatgtttgttgtagcagagttcagaaaatccaaaattt |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24292717 |
catcatccattactttttgtcacaccctatctcatggatttctagattattttataacatataatgtttgttgtagcagagttcagaaaatccaaaattt |
24292816 |
T |
|
| Q |
306 |
gcaaaaacaattttcgtcatcagtatcaagatgacttagatattgacaatggtttgagaagcatgtgtgacaaaattggatnnnnnnnnnnnntgtgtca |
405 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
24292817 |
gcaaaaacaattttcgtcattagtatcaagatgacttagatattgacaatggtttgagaagcatgtgtgacaaaattggataaaaataaaaaatgtgtca |
24292916 |
T |
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| Q |
406 |
ctcttaagggtgacacttttgaaaagaaatattctcttaaactggccgacactaaagatgaggcctaaatacatatatagtttatac |
492 |
Q |
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| T |
24292917 |
ctcttaagggtgacacttttgaaaagaaatattctcttaaactggccgacactaaagatgaggcctaaatacatatatagtttatac |
24293003 |
T |
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Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 82 - 174
Target Start/End: Complemental strand, 5772157 - 5772065
Alignment:
| Q |
82 |
cagggacctttagccttttataaggggttcataccaaatttcggacggctaggatcgtggaatgtgatcatgtttttaacactagaacaggta |
174 |
Q |
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||||||||||| || |||||||| |||||| | |||||||| |||||||||||||| ||||| ||||| |||||| |||| |||||||||||| |
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| T |
5772157 |
cagggacctttggcgttttataaagggttcctcccaaattttggacggctaggatcttggaacgtgattatgtttctaaccctagaacaggta |
5772065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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