View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9967_low_3 (Length: 336)
Name: NF9967_low_3
Description: NF9967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9967_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 26666715 - 26666399
Alignment:
| Q |
1 |
atgtcaccactcttacctcatcaaccaaatacaaatctcagagtcatccttagtcactacttctacatcatgttctgcaatggtctacttttgagcttgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26666715 |
atgtcaccactcttacctcatcaaccaaatacaaatctcagagtcatccttagtcactacttctacatcatgttctgcaatggtctacttttgagcttgt |
26666616 |
T |
|
| Q |
101 |
gtatgaaaaacataaaaccaatattctgtcacagtattgtaacatatattttttaacaatattacacaatttaaacataaagacaagatgtggcagtgat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26666615 |
gtatgaaaaacataaaaccaatattctgtcacagtattgtaacatatttttttttacaatattacacaatttaaacataaagacaagatgtggcagtgat |
26666516 |
T |
|
| Q |
201 |
acttcagatattgaaccacacttttctaatgcagaggactaccaatctgttaactttttgagtataaacctcacaacctgatgaattatattttcaatac |
300 |
Q |
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|||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
26666515 |
acttcacatattgaaccacacttttctaatgcatag--tcaccaatctgttaactttttgagtataaaactcacaacctgatgaattatattttcaatac |
26666418 |
T |
|
| Q |
301 |
caaaaacttaaatgtgaca |
319 |
Q |
| |
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||||||||||||||||||| |
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| T |
26666417 |
caaaaacttaaatgtgaca |
26666399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 105 - 152
Target Start/End: Complemental strand, 29301126 - 29301079
Alignment:
| Q |
105 |
gaaaaacataaaaccaatattctgtcacagtattgtaacatatatttt |
152 |
Q |
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| T |
29301126 |
gaaaaacagaaaacaaatattctgtcacagtattgtaacatatatttt |
29301079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 105 - 152
Target Start/End: Complemental strand, 29307788 - 29307741
Alignment:
| Q |
105 |
gaaaaacataaaaccaatattctgtcacagtattgtaacatatatttt |
152 |
Q |
| |
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|||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
29307788 |
gaaaaacagaaaaccaatattctgtcacagcattgtaacatatatttt |
29307741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 108
Target Start/End: Complemental strand, 29307975 - 29307934
Alignment:
| Q |
67 |
atcatgttctgcaatggtctacttttgagcttgtgtatgaaa |
108 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29307975 |
atcatattctgcaatggtctacttttgagcttgtgtatgaaa |
29307934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 29301311 - 29301274
Alignment:
| Q |
67 |
atcatgttctgcaatggtctacttttgagcttgtgtat |
104 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||| |
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|
| T |
29301311 |
atcatattctgcaatggtctacttttgagcttgtgtat |
29301274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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