View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9967_low_7 (Length: 225)

Name: NF9967_low_7
Description: NF9967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9967_low_7
NF9967_low_7
[»] chr8 (12 HSPs)
chr8 (56-217)||(20104366-20104527)
chr8 (115-200)||(36697742-36697827)
chr8 (1-38)||(4786700-4786737)
chr8 (1-38)||(5526602-5526639)
chr8 (1-38)||(19163424-19163461)
chr8 (1-38)||(28435410-28435447)
chr8 (1-38)||(29007517-29007554)
chr8 (1-38)||(38815801-38815838)
chr8 (1-38)||(38815908-38815945)
chr8 (1-38)||(40305010-40305047)
chr8 (1-38)||(40305117-40305154)
chr8 (1-38)||(45145600-45145637)
[»] chr2 (8 HSPs)
chr2 (1-38)||(44402082-44402119)
chr2 (1-38)||(6048067-6048104)
chr2 (1-38)||(7354768-7354805)
chr2 (1-38)||(18649619-18649656)
chr2 (1-38)||(21208890-21208927)
chr2 (1-38)||(22352548-22352585)
chr2 (1-38)||(33618302-33618339)
chr2 (1-37)||(6047918-6047954)
[»] chr1 (11 HSPs)
chr1 (118-173)||(25934782-25934837)
chr1 (1-38)||(9135623-9135660)
chr1 (1-38)||(11994858-11994895)
chr1 (1-38)||(15998316-15998353)
chr1 (1-38)||(22954877-22954914)
chr1 (1-38)||(31414861-31414898)
chr1 (1-38)||(31852058-31852095)
chr1 (1-38)||(34662403-34662440)
chr1 (1-38)||(39151722-39151759)
chr1 (1-38)||(41649637-41649674)
chr1 (1-38)||(44371217-44371254)
[»] scaffold0633 (1 HSPs)
scaffold0633 (1-38)||(5322-5359)
[»] scaffold0200 (1 HSPs)
scaffold0200 (1-38)||(22407-22444)
[»] scaffold0036 (1 HSPs)
scaffold0036 (1-38)||(36408-36445)
[»] chr7 (4 HSPs)
chr7 (1-38)||(2850974-2851011)
chr7 (1-38)||(10300926-10300963)
chr7 (1-38)||(27878840-27878877)
chr7 (1-38)||(27878908-27878945)
[»] chr6 (6 HSPs)
chr6 (1-38)||(383605-383642)
chr6 (1-38)||(14897045-14897082)
chr6 (1-38)||(24914338-24914375)
chr6 (1-38)||(26597270-26597307)
chr6 (1-38)||(28034013-28034050)
chr6 (1-38)||(28034120-28034157)
[»] chr5 (5 HSPs)
chr5 (1-38)||(5226017-5226054)
chr5 (1-38)||(6168677-6168714)
chr5 (1-38)||(8618395-8618432)
chr5 (1-38)||(16067178-16067215)
chr5 (1-38)||(25600575-25600612)
[»] chr4 (8 HSPs)
chr4 (1-38)||(2994719-2994756)
chr4 (1-38)||(39466702-39466739)
chr4 (1-38)||(39466808-39466845)
chr4 (1-38)||(45861003-45861040)
chr4 (1-38)||(45861110-45861147)
chr4 (1-38)||(47628386-47628423)
chr4 (1-38)||(54677348-54677385)
chr4 (1-38)||(54927210-54927247)
[»] chr3 (5 HSPs)
chr3 (1-38)||(13927500-13927537)
chr3 (1-38)||(16607459-16607496)
chr3 (1-38)||(42605992-42606029)
chr3 (1-38)||(44687898-44687935)
chr3 (1-38)||(48908658-48908695)


Alignment Details
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 56 - 217
Target Start/End: Original strand, 20104366 - 20104527
Alignment:
Q  56 gacatatcaaatgagaggactccttattatgagaagatgagagcaataaatttcagttgttagatcaaattgtacggtgcagattaaaagtaccacacaa 155  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  20104366 gacatatcaaatgagaggactccttattatgagaggatgagagcaataaatatcagttgttagatcaaattgtacggtgcagattaaaagtaccacacaa 20104465  T
Q  156 aataaattgcacaggatttgtttccaacgcttcttcttcctcttctgtatcgcacctatgct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20104466 aataaattgcacaggatttgtttccaacgcttcttcttcctcttctgtatcgcacctctgct 20104527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 115 - 200
Target Start/End: Original strand, 36697742 - 36697827
Alignment:
Q  115 ttagatcaaattgtacggtgcagattaaaagtaccacacaaaataaattgcacaggatttgtttccaacgcttcttcttcctcttc 200  Q
    ||||||||||||||||||||||   ||||||| ||||||||||| ||||||||||||||| |||  |  |||||| ||||||||||    
T  36697742 ttagatcaaattgtacggtgcatgctaaaagttccacacaaaattaattgcacaggatttatttatactgcttctccttcctcttc 36697827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 4786737 - 4786700
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  4786737 aaaaagtgaattttgcttatattttgaaacggagggag 4786700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 5526602 - 5526639
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  5526602 aaaaagtgaattttgcttatattttgaaacggagggag 5526639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 19163424 - 19163461
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  19163424 aaaaagtgaattttgcttatattttgaaacggagggag 19163461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 28435447 - 28435410
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  28435447 aaaaaatgaattttgcttatattttgacacggagggag 28435410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 29007517 - 29007554
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  29007517 aaaaagtgaattttgcttatattttgatacggagggag 29007554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 38815838 - 38815801
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  38815838 aaaaagtgaattttgcttatattttgaaacggagggag 38815801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 38815908 - 38815945
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  38815908 aaaaagtgaattttgcttatattttgaaacggagggag 38815945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 40305047 - 40305010
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  40305047 aaaaagtgaattttgcttatattttgatacggagggag 40305010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 40305117 - 40305154
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  40305117 aaaaagtgaattttgcttttatttagacacggagggag 40305154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 45145637 - 45145600
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  45145637 aaaaagtgaattttgcttatattttgaaacggagggag 45145600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 44402119 - 44402082
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  44402119 aaaaagtgaattttgcttatattttgacacggagggag 44402082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 6048067 - 6048104
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  6048067 aaaaagtgaattttgcttatattttgaaacggagggag 6048104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 7354805 - 7354768
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  7354805 aaaaagtgaattttgcttatattttgaaacggagggag 7354768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 18649656 - 18649619
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  18649656 aaaaagtgaattttgcttatattttgaaacggagggag 18649619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 21208927 - 21208890
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  21208927 aaaaagtgaattttgcttatattttgaaacggagggag 21208890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 22352548 - 22352585
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    ||||||||||||||| |||||||| |||||||||||||    
T  22352548 aaaaagtgaattttgtttatattttgacacggagggag 22352585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 33618302 - 33618339
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  33618302 aaaaagtgaattttgcttatattttgaaacggagggag 33618339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 6047954 - 6047918
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggaggga 37  Q
    |||||||||||||||||||||||| || |||||||||    
T  6047954 aaaaagtgaattttgcttatattttgatacggaggga 6047918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 173
Target Start/End: Complemental strand, 25934837 - 25934782
Alignment:
Q  118 gatcaaattgtacggtgcagattaaaagtaccacacaaaataaattgcacaggatt 173  Q
    ||||||||||||| | ||||||||||||| | ||| ||||| ||||||||||||||    
T  25934837 gatcaaattgtacagcgcagattaaaagttcaacataaaattaattgcacaggatt 25934782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 9135623 - 9135660
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  9135623 aaaaagtgaattttgcttatattttgatacggagggag 9135660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 11994895 - 11994858
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  11994895 aaaaagtgaattttgcttatattttgaaacggagggag 11994858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 15998316 - 15998353
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  15998316 aaaaagtgaattttgcttatattttgaaacggagggag 15998353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 22954877 - 22954914
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  22954877 aaaaagtgaattttgcttatattttaacacggagggag 22954914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 31414861 - 31414898
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  31414861 aaaaagtgaattttgcttatattttgaaacggagggag 31414898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 31852095 - 31852058
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  31852095 aaaaagtgaattttgcttatattttgagacggagggag 31852058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 34662440 - 34662403
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  34662440 aaaaagtgaattttgcttatattttgaaacggagggag 34662403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 39151759 - 39151722
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  39151759 aaaaagtgaattttgcttatattttgaaacggagggag 39151722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 41649637 - 41649674
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  41649637 aaaaagtgaattttgcttatattttgagacggagggag 41649674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 44371254 - 44371217
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  44371254 aaaaagtgaattttgcttatattttgagacggagggag 44371217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0633 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 5359 - 5322
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  5359 aaaaagtgaattttgcttatattttgagacggagggag 5322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 22407 - 22444
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  22407 aaaaagtgaattttgcttatattttgatacggagggag 22444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 36445 - 36408
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  36445 aaaaagtgaattttgcttatattttgaaacggagggag 36408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 2851011 - 2850974
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  2851011 aaaaagtgaattttgcttatattttgaaacggagggag 2850974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 10300926 - 10300963
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  10300926 aaaaagtgaattttgcttatattttgaaacggagggag 10300963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 27878877 - 27878840
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  27878877 aaaaagtgaattttgcttatattttgatacggagggag 27878840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 27878908 - 27878945
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  27878908 aaaaagtgaattttgcttatattttgatacggagggag 27878945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 383642 - 383605
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  383642 aaaaagtgaattttgcttatattttgaaacggagggag 383605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 14897082 - 14897045
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  14897082 aaaaagtgaattttgcttatattttgatacggagggag 14897045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 24914375 - 24914338
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  24914375 aaaaagtgaattttgcttatattttgaaacggagggag 24914338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 26597270 - 26597307
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  26597270 aaaaagtgaattttgcttatattttgaaacggagggag 26597307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 28034050 - 28034013
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  28034050 aaaaagtgaattttgcttatattttgatacggagggag 28034013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 28034120 - 28034157
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  28034120 aaaaagtgatttttgcttatattttgacacggagggag 28034157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 5226054 - 5226017
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  5226054 aaaaagtgaattttgcttatattttgaaacggagggag 5226017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 6168714 - 6168677
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  6168714 aaaaagtgaattttgcttatattttgaaacggagggag 6168677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 8618432 - 8618395
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  8618432 aaaaagtgaattttgcttatattttgaaacggagggag 8618395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 16067178 - 16067215
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  16067178 aaaaagtgaattttgcttatattttgaaacggagggag 16067215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 25600612 - 25600575
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    ||||||||||||||| |||||||| |||||||||||||    
T  25600612 aaaaagtgaattttgtttatattttgacacggagggag 25600575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 2994756 - 2994719
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  2994756 aaaaagtgaattttgcttatattttgaaacggagggag 2994719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 39466739 - 39466702
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  39466739 aaaaagtgaattttgcttatattttgatacggagggag 39466702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 39466808 - 39466845
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  39466808 aaaaagtgatttttgcttatattttgacacggagggag 39466845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 45861040 - 45861003
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  45861040 aaaaagtgaattttgcttatattttgaaacggagggag 45861003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 45861110 - 45861147
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  45861110 aaaaagtgaattttgcttatattttgaaacggagggag 45861147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 47628386 - 47628423
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  47628386 aaaaagtgaattttgcttatattttgaaacggagggag 47628423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 54677385 - 54677348
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  54677385 aaaaagtgaattttgcttatattttgaaacggagggag 54677348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 54927210 - 54927247
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  54927210 aaaaagtgaattttgcttatattttgaaacggagggag 54927247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 13927500 - 13927537
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    ||||||||||||||| |||||||| |||||||||||||    
T  13927500 aaaaagtgaattttgtttatattttgacacggagggag 13927537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 16607459 - 16607496
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  16607459 aaaaagtgaattttgcttatattttgatacggagggag 16607496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 42606029 - 42605992
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  42606029 aaaatgtgaattttgcttatatttcgaaacggagggag 42605992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 44687935 - 44687898
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  44687935 aaaaagtgaattttgcttatatttagaaacggagggag 44687898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 48908695 - 48908658
Alignment:
Q  1 aaaaagtgaattttgcttatatttcgacacggagggag 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  48908695 aaaaagtgaattttgcttatattttgaaacggagggag 48908658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University