View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9968_high_1 (Length: 463)
Name: NF9968_high_1
Description: NF9968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9968_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 17 - 456
Target Start/End: Complemental strand, 153704 - 153265
Alignment:
| Q |
17 |
aatatctgtccaccacttcaagccattagctaactactatttgttgttgtatccatgtattcaaatcaaaaccagtttgaacttaaaagtaaagtaatta |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
153704 |
aatatctgtccaccacttcaagccattagctaactactatttgttgttgtatccatgtatgcaaatcaaaaccagtttgaacttaaaagtaaagtaatta |
153605 |
T |
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| Q |
117 |
cataccttgacaaagagggtagatggggccaatatagaatgtgcatcaatgccgttgaggtatgccttcacctctggtatgccagagccagcagctgcag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
153604 |
cataccttgacaaagagggtagatggggccaatatagaatgtgcatcaatgccgttgaggtatgccttcacctctggtatgccagagccagcagctgcag |
153505 |
T |
|
| Q |
217 |
gagcaatgtaagcacacagggctgcagcaccaacccctaaaatcatgttacaaccaacgtacactgcaaatgcctcatggtacttttgcttgagcatgag |
316 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
153504 |
gagcaatgtaagcacacagggctgccgcaccaacccctaaaatcatgttacaaccaacgtacactgcaaatgcctcatggtacttttgcttgagcatgag |
153405 |
T |
|
| Q |
317 |
attgttggtgagtagaagtttgaaaccagcaatattctcaactccaaggttattaaagaacccaacaagtcctgtaattaaaccaataagaagtgcaagg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
153404 |
attgttggtgagtagaagtttgaaaccagcaatattctcaactccaaggttattaaagaacccaacaagtcctgtaattaaaccaataagaagtgcaagg |
153305 |
T |
|
| Q |
417 |
gtccacttcagaacaacatattggtatatctcaacctttg |
456 |
Q |
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| T |
153304 |
gtccacttcagaacaacatattggtatatctcaacctttg |
153265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 309 - 414
Target Start/End: Original strand, 56471562 - 56471667
Alignment:
| Q |
309 |
agcatgagattgttggtgagtagaagtttgaaaccagcaatattctcaactccaaggttattaaagaacccaacaagtcctgtaattaaaccaataagaa |
408 |
Q |
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|||||||||| ||||||||| ||||| ||||||||||||||||||||||| |||| |||||| ||||| | ||||| ||||| |||||||||||||| |
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| T |
56471562 |
agcatgagatggttggtgaggagaagcttgaaaccagcaatattctcaacaccaatgttattgaagaaggcgacaagacctgtgcctaaaccaataagaa |
56471661 |
T |
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| Q |
409 |
gtgcaa |
414 |
Q |
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|||||| |
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| T |
56471662 |
gtgcaa |
56471667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 120 - 272
Target Start/End: Original strand, 56471251 - 56471403
Alignment:
| Q |
120 |
accttgacaaagagggtagatggggccaatatagaatgtgcatcaatgccgttgaggtatgccttcacctctggtatgccagagccagcagctgcaggag |
219 |
Q |
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||||| |||||||| |||| ||| |||||||||||| | ||||||| ||| || || |||||||| ||||| ||||||||||| || || |||||||| | |
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| T |
56471251 |
acctttacaaagagagtaggtggagccaatatagaaggagcatcaacgccattaagatatgccttgacctcaggtatgccagatccggctgctgcagggg |
56471350 |
T |
|
| Q |
220 |
caatgtaagcacacagggctgcagcaccaacccctaaaatcatgttacaacca |
272 |
Q |
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| | || || ||||||||||| ||| | | |||||| ||||||||||||| |
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| T |
56471351 |
cgacataggcgcacagggctgctgcagcgatggctaaaaccatgttacaacca |
56471403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 120 - 244
Target Start/End: Original strand, 24332112 - 24332236
Alignment:
| Q |
120 |
accttgacaaagagggtagatggggccaatatagaatgtgcatcaatgccgttgaggtatgccttcacctctggtatgccagagccagcagctgcaggag |
219 |
Q |
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||||| ||||| ||||| | |||||||| |||||||| ||||| ||||||||||| ||||| || ||||| |||||||||||||| || |||| ||||| |
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| T |
24332112 |
acctttacaaaaagggtggttggggccagaatagaatgagcatcgatgccgttgagatatgctttaacctccggtatgccagagcctgctgctgaaggag |
24332211 |
T |
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| Q |
220 |
caatgtaagcacacagggctgcagc |
244 |
Q |
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||||| ||||||| || |||||||| |
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| T |
24332212 |
caatgaaagcacagagtgctgcagc |
24332236 |
T |
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