View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9968_low_1 (Length: 671)
Name: NF9968_low_1
Description: NF9968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9968_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 7e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 291 - 568
Target Start/End: Original strand, 25544053 - 25544331
Alignment:
| Q |
291 |
ttgtcgaaatcgaatattgtcgttttggaaatgcaaa-catactaagcagagannnnnnnnnnnacaatattagcaagatctcctttgaattagaccgtt |
389 |
Q |
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| T |
25544053 |
ttgtcgaaatcaaagattgtcgttttggaaatgcaaaacatactaagcagaggtttttttttttacaatattagcaagatctcctttgaattagaccgtt |
25544152 |
T |
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| Q |
390 |
gtctagcttcatatctcaaagatgtgtctgtgtttcaagctctcggccgcggaatgagcaataatggtgtcattattgtggaggttgaaaagnnnnnnna |
489 |
Q |
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| T |
25544153 |
gtctagcttcatatctcgaagatgcgtctgtgtttcaagctctcggccgccgaatgagcaataatggtgtcattattgtggaggttgaatcgttttttta |
25544252 |
T |
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| Q |
490 |
acattgattagttcaatgttgaaactattcaatgttaaaaaccgcttcaatttccaaaataatggtgacaccattattg |
568 |
Q |
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| T |
25544253 |
acattgaatagttcaatgtttaaactattcaatgttaaaaaacgcttccatttccaaaataatggtgactccattattg |
25544331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 250
Target Start/End: Original strand, 25544018 - 25544056
Alignment:
| Q |
212 |
tctatccaactacgattcgttcatgttatatgagcttgt |
250 |
Q |
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| T |
25544018 |
tctatccgactacgattcgttcatgttatatgagcttgt |
25544056 |
T |
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