View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9968_low_4 (Length: 414)

Name: NF9968_low_4
Description: NF9968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9968_low_4
NF9968_low_4
[»] chr1 (8 HSPs)
chr1 (1-400)||(32502901-32503293)
chr1 (58-181)||(32022616-32022741)
chr1 (85-236)||(48611676-48611829)
chr1 (60-234)||(19940548-19940723)
chr1 (88-181)||(34663092-34663185)
chr1 (109-178)||(45485044-45485113)
chr1 (103-178)||(4941199-4941274)
chr1 (102-229)||(1408615-1408741)
[»] chr2 (6 HSPs)
chr2 (59-183)||(9521064-9521182)
chr2 (64-211)||(27322708-27322854)
chr2 (101-181)||(9116405-9116485)
chr2 (108-181)||(16634421-16634494)
chr2 (114-183)||(3037421-3037490)
chr2 (195-233)||(19679448-19679486)
[»] chr3 (8 HSPs)
chr3 (58-209)||(8936054-8936205)
chr3 (101-181)||(43178597-43178677)
chr3 (1-60)||(4395315-4395374)
chr3 (85-181)||(42388719-42388815)
chr3 (85-228)||(36563038-36563180)
chr3 (101-181)||(1294908-1294988)
chr3 (85-228)||(36545134-36545276)
chr3 (235-301)||(4395256-4395323)
[»] chr8 (8 HSPs)
chr8 (59-235)||(9799198-9799375)
chr8 (64-181)||(40995823-40995942)
chr8 (114-183)||(7222846-7222913)
chr8 (101-234)||(30478408-30478540)
chr8 (111-178)||(45397512-45397578)
chr8 (101-182)||(12000142-12000223)
chr8 (59-104)||(35467786-35467831)
chr8 (86-178)||(15111876-15111968)
[»] scaffold0272 (1 HSPs)
scaffold0272 (64-234)||(6063-6235)
[»] chr4 (9 HSPs)
chr4 (58-235)||(19328775-19328950)
chr4 (86-183)||(27756450-27756547)
chr4 (1-60)||(18049952-18050011)
chr4 (101-178)||(3913647-3913724)
chr4 (58-178)||(38509880-38510000)
chr4 (235-301)||(18050003-18050070)
chr4 (120-182)||(4687363-4687425)
chr4 (101-178)||(3427861-3427938)
chr4 (120-178)||(25474657-25474715)
[»] chr7 (4 HSPs)
chr7 (85-181)||(30486952-30487048)
chr7 (101-228)||(37720509-37720635)
chr7 (88-183)||(28710390-28710485)
chr7 (194-238)||(40234663-40234707)
[»] chr5 (11 HSPs)
chr5 (64-211)||(28988361-28988512)
chr5 (65-229)||(21067574-21067739)
chr5 (58-207)||(24233126-24233277)
chr5 (112-181)||(39753318-39753387)
chr5 (110-183)||(19187144-19187217)
chr5 (109-238)||(36603640-36603769)
chr5 (91-211)||(14122887-14123006)
chr5 (111-183)||(1179953-1180025)
chr5 (114-178)||(38282505-38282569)
chr5 (102-183)||(39031661-39031741)
chr5 (86-158)||(6677065-6677137)
[»] scaffold0316 (1 HSPs)
scaffold0316 (101-236)||(1280-1415)
[»] chr6 (1 HSPs)
chr6 (109-183)||(17170671-17170745)


Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 32502901 - 32503293
Alignment:
Q  1 tacatctattgtacaattcacaaatcatcattttgatggggtgttactcaaatttgcaaaggataatgttaaccagtgccccgagcactggttaaagagc 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||   | ||| | ||||| |||     
T  32502901 tacatctattgtacaattcacaaatcatcattttgatggtgtgttactcaaatttgcgaaggataatgttaaccaatgcg--gggcattagttaaggagt 32502998  T
Q  101 caaatgtggtaagtattacattgaaatttgtgctgtcaacttttgaaaagtataaaaagtgttacttttattttaaaactttcnnnnnnnagtttcctta 200  Q
    |||||||||||||||   ||||| ||||||||||||||| |||| |||| |||||||||| ||||||||||||||||| ||||       ||||| ||||    
T  32502999 caaatgtggtaagta---cattggaatttgtgctgtcaatttttaaaaaatataaaaagtattacttttattttaaaattttctttttttagttttctta 32503095  T
Q  201 accagtgcccctagggcaccggttaacatcacccatttgcgaaatatacgtgtagactatatccagctcttgagatttgttctaaatgaaacaacaacac 300  Q
    | ||||| | |  ||||||| ||||||||||| |||||| |||||||||||||||||  |||  ||||||||||||||||||||||||||||||||| ||    
T  32503096 atcagtgtctcg-gggcaccagttaacatcactcatttgggaaatatacgtgtagaccgtatatagctcttgagatttgttctaaatgaaacaacaatac 32503194  T
Q  301 ccttgaatcataagcgcgggctaagataagannnnnnnnatgcatttggtatatcactttgtaattcattttctctattttgtacgaccattattctctg 400  Q
    |||||||||||||| |||||||||||||| |        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32503195 ccttgaatcataagggcgggctaagataata-tttttttatgcatttggtatatcactttgtaattcattttctctattttgtacgaccattattctctg 32503293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 58 - 181
Target Start/End: Complemental strand, 32022741 - 32022616
Alignment:
Q  58 aaaggataatgttaaccagtgccccgag--cactggttaaagagccaaatgtggtaagtattacattgaaatttgtgctgtcaacttttgaaaagtataa 155  Q
    |||||||||||||||||||||| ||| |  |||||||||| ||| |||||||||||||||||||||||||| |||| |||||||||||| ||||||||||    
T  32022741 aaaggataatgttaaccagtgctccgggggcactggttaaggagtcaaatgtggtaagtattacattgaaaattgtactgtcaactttttaaaagtataa 32022642  T
Q  156 aaagtgttacttttattttaaaactt 181  Q
    ||||| ||||||||||||||||||||    
T  32022641 aaagtattacttttattttaaaactt 32022616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 85 - 236
Target Start/End: Complemental strand, 48611829 - 48611676
Alignment:
Q  85 gcactggttaaagagccaaatgtggta--agtattacattgaaatttgtgctgtcaacttttgaaaagtataaaaagtgttacttttattttaaaacttt 182  Q
    |||||| |||||||| ||||||| |||  |||| ||||||| || ||||| ||| ||||||| ||||||||||||||||||||||||||||||||||| |    
T  48611829 gcactgattaaagagtcaaatgtagtataagtactacattgcaacttgtgttgttaacttttcaaaagtataaaaagtgttacttttattttaaaactat 48611730  T
Q  183 cnnnnnnnagtttccttaaccagtgcccctagggcaccggttaacatcacccat 236  Q
    |       |||||||||||||||||||||   | ||||||||||||| ||||||    
T  48611729 ctttttttagtttccttaaccagtgccccgtagacaccggttaacatgacccat 48611676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 60 - 234
Target Start/End: Complemental strand, 19940723 - 19940548
Alignment:
Q  60 aggataatgttaaccagtgcccc--gagcactggttaaagagccaaatgtggtaagtattacattgaaatttgtgctgtcaacttttgaaaagtataaaa 157  Q
    |||| |||||||||| |||||||  | ||||||||||| ||  ||||||| ||||||||| |||||||| || |||||||||||  | ||||| ||||||    
T  19940723 aggaaaatgttaaccggtgcccccggggcactggttaaggaatcaaatgtagtaagtattgcattgaaacttatgctgtcaactcctcaaaagcataaaa 19940624  T
Q  158 agtgttacttttattttaaaactttcnnnnnnnagtttccttaaccagtgcccctagggcaccggttaacatcaccc 234  Q
    ||||||| ||| | ||||||||||||       |||||||||||||||||||||  |||||||||||||||| ||||    
T  19940623 agtgttattttcactttaaaactttc-ctttttagtttccttaaccagtgccccgggggcaccggttaacatgaccc 19940548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 88 - 181
Target Start/End: Original strand, 34663092 - 34663185
Alignment:
Q  88 ctggttaaagagccaaatgtggtaagtattacattgaaatttgtgctgtcaacttttgaaaagtataaaaagtgttacttttattttaaaactt 181  Q
    |||||||| ||| |||||||||||||||||  |||| || |||| |||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  34663092 ctggttaaggagtcaaatgtggtaagtattgtattggaacttgtactgtcaacttttcaaaagtataaaaagtgttactttcattttaaaactt 34663185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 45485113 - 45485044
Alignment:
Q  109 gtaagtattacattgaaatttgtgctgtcaacttttgaaaagtataaaaagtgttacttttattttaaaa 178  Q
    ||||||||| |||||||||||||| ||||||||| | ||||| |||||| |||||| |||||||||||||    
T  45485113 gtaagtattgcattgaaatttgtgttgtcaacttctaaaaagcataaaatgtgttatttttattttaaaa 45485044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 103 - 178
Target Start/End: Complemental strand, 4941274 - 4941199
Alignment:
Q  103 aatgtggtaagtattacattgaaatttgtgctgtcaacttttgaaaagtataaaaagtgttacttttattttaaaa 178  Q
    ||||| |||| |||| |||||||| ||||| ||||||||  | ||||| ||||||||||||| |||||||||||||    
T  4941274 aatgtagtaattattgcattgaaacttgtgttgtcaactcctcaaaagcataaaaagtgttatttttattttaaaa 4941199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 229
Target Start/End: Original strand, 1408615 - 1408741
Alignment:
Q  102 aaatgtggtaagtattacattgaaatttgtgctgtcaacttttgaaaagtataaaaagtgttacttttattttaaaactttcnnnnnnnagtttccttaa 201  Q
    |||||| |||| | |||||||| || ||||| |||||||| || ||||  ||||||||| ||| ||| ||||||||||||||       |||||||||||    
T  1408615 aaatgtagtaatttttacattggaacttgtgttgtcaactcttcaaaaacataaaaagttttattttcattttaaaactttctttttttagtttccttaa 1408714  T
Q  202 ccagtgcccctagggcaccggttaacat 229  Q
    ||| ||| || ||||||  |||||||||    
T  1408715 ccaatgcacc-agggcattggttaacat 1408741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 6e-41; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 59 - 183
Target Start/End: Complemental strand, 9521182 - 9521064
Alignment:
Q  59 aaggataatgttaaccagtgccccgagcactggttaaagagccaaatgtggtaagtattacattgaaatttgtgctgtcaacttttgaaaagtataaaaa 158  Q
    ||||||||||||||||||||||||      ||||||| ||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9521182 aaggataatgttaaccagtgcccc------tggttaaggagtcaaatgtgataagtattacattgaaacttgtgctgtcaacttttgaaaagtataaaaa 9521089  T
Q  159 gtgttacttttattttaaaactttc 183  Q
    |||||||||||||||||||||||||    
T  9521088 gtgttacttttattttaaaactttc 9521064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 64 - 211
Target Start/End: Original strand, 27322708 - 27322854
Alignment:
Q  64 taatgttaaccagtgccccgagcactggttaaagagccaaatgtggtaagtattacattgaaatttgtgctgtcaacttttgaaaagtataaaaagtgtt 163  Q
    |||||||||||||||||||| ||||||||||| ||| ||||||||||||||||| ||||| || |||||||||||||| |||||||| ||||||||| ||    
T  27322708 taatgttaaccagtgccccg-gcactggttaaggagtcaaatgtggtaagtattgcattggaacttgtgctgtcaactcttgaaaagcataaaaagtatt 27322806  T
Q  164 acttttattttaaaactttcnnnnnnnagtttccttaaccagtgcccc 211  Q
    |||||||||||  ||||| |       |||||||||||||||||||||    
T  27322807 acttttattttcgaacttcctttttttagtttccttaaccagtgcccc 27322854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 101 - 181
Target Start/End: Complemental strand, 9116485 - 9116405
Alignment:
Q  101 caaatgtggtaagtattacattgaaatttgtgctgtcaacttttgaaaagtataaaaagtgttacttttattttaaaactt 181  Q
    |||||||||||| |||| ||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9116485 caaatgtggtaaatattgcattggaacttgtgctgtcaacttttgaaaagtatacaaagtgttacttttattttaaaactt 9116405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 108 - 181
Target Start/End: Original strand, 16634421 - 16634494
Alignment:
Q  108 ggtaagtattacattgaaatttgtgctgtcaacttttgaaaagtataaaaagtgttacttttattttaaaactt 181  Q
    |||||||||||||||| |||||||||||||||||||| ||||| ||||||| |||| ||| |||||||||||||    
T  16634421 ggtaagtattacattggaatttgtgctgtcaacttttcaaaagcataaaaaatgttgcttctattttaaaactt 16634494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 114 - 183
Target Start/End: Original strand, 3037421 - 3037490
Alignment:
Q  114 tattacattgaaatttgtgctgtcaacttttgaaaagtataaaaagtgttacttttattttaaaactttc 183  Q
    |||||||||| |||||||| ||||||||  | ||||||||||||||||||||||| ||||||||| ||||    
T  3037421 tattacattggaatttgtgttgtcaactccttaaaagtataaaaagtgttactttgattttaaaattttc 3037490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 233
Target Start/End: Original strand, 19679448 - 19679486
Alignment:
Q  195 tccttaaccagtgcccctagggcaccggttaacatcacc 233  Q
    ||||||||||||||||| |||||||||||||||| ||||    
T  19679448 tccttaaccagtgccccaagggcaccggttaacaacacc 19679486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 58 - 209
Target Start/End: Complemental strand, 8936205 - 8936054
Alignment:
Q  58 aaaggataatgttaaccagtgccccgagcactggttaaagagccaaatgtggtaagtattacattgaaatttgtgctgtcaacttttgaaaagtataaaa 157  Q
    ||||| ||||||||||||||||| || ||||||||||| |||  |||||||| |||||||||||||||| |||||||||||||  |||||||| ||||||    
T  8936205 aaagggtaatgttaaccagtgcctcgggcactggttaaggagttaaatgtggcaagtattacattgaaacttgtgctgtcaacccttgaaaagcataaaa 8936106  T
Q  158 agtgttacttttattttaaaactttcnnnnnnnagtttccttaaccagtgcc 209  Q
    |||||||||||||||||||||||| |       |||||||||||||||||||    
T  8936105 agtgttacttttattttaaaacttccttttttaagtttccttaaccagtgcc 8936054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 101 - 181
Target Start/End: Original strand, 43178597 - 43178677
Alignment:
Q  101 caaatgtggtaagtattacattgaaatttgtgctgtcaacttttgaaaagtataaaaagtgttacttttattttaaaactt 181  Q
    |||||||  ||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  43178597 caaatgtaataaatattacattgaaatttgtactgtcaacttttgaaaagtataaaaaatgttacttttattttaaaactt 43178677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 4395374 - 4395315
Alignment:
Q  1 tacatctattgtacaattcacaaatcatcattttgatggggtgttactcaaatttgcaaa 60  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  4395374 tacatctgttgtacaattcacaaatcatcattttgatggtgtgttactcaaatttgcaaa 4395315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 85 - 181
Target Start/End: Original strand, 42388719 - 42388815
Alignment:
Q  85 gcactggttaaagagccaaatgtggtaagtattacattgaaatttgtgctgtcaacttttgaaaagtataaaaagtgttacttttattttaaaactt 181  Q
    |||||||||||  || ||||||| |||||||||  |||| |||||||||||||||||||| ||||  ||||||||||||| ||| || |||||||||    
T  42388719 gcactggttaagaagtcaaatgtagtaagtattgtattggaatttgtgctgtcaacttttcaaaaacataaaaagtgttattttcatcttaaaactt 42388815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 85 - 228
Target Start/End: Original strand, 36563038 - 36563180
Alignment:
Q  85 gcactggttaaagagccaaatgtggtaagtattacattgaaatttgtgctgtcaacttttgaaaagtataaaaagtgttacttttattttaaaactttcn 184  Q
    ||||||||||| ||  ||||||| |||||||||  |||| || ||||| ||||||||  | ||||| ||||||||||||| ||| | ||||||||||||     
T  36563038 gcactggttaacgaaacaaatgtagtaagtattgtattgtaacttgtgatgtcaactcctcaaaagcataaaaagtgttattttcactttaaaactttc- 36563136  T
Q  185 nnnnnnagtttccttaaccagtgcccctagggcaccggttaaca 228  Q
          |||||| ||||||||||||||  |||||||||||||||    
T  36563137 ctttttagtttctttaaccagtgccccgggggcaccggttaaca 36563180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 101 - 181
Target Start/End: Complemental strand, 1294988 - 1294908
Alignment:
Q  101 caaatgtggtaagtattacattgaaatttgtgctgtcaacttttgaaaagtataaaaagtgttacttttattttaaaactt 181  Q
    |||||||  ||||||||||||||||||||||||||||| || || | ||  ||||||| ||||||||| ||||||||||||    
T  1294988 caaatgtaataagtattacattgaaatttgtgctgtcagctcttcataaacataaaaaatgttactttcattttaaaactt 1294908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 228
Target Start/End: Complemental strand, 36545276 - 36545134
Alignment:
Q  85 gcactggttaaagagccaaatgtggtaagtattacattgaaatttgtgctgtcaacttttgaaaagtataaaaagtgttacttttattttaaaactttcn 184  Q
    ||||||||||| ||  ||||||| |||||||||  |||| || ||||| ||||||||  | ||||| ||||||||||||| ||| | ||||||| ||||     
T  36545276 gcactggttaacgaaacaaatgtagtaagtattgtattgtaacttgtgatgtcaactcctcaaaagcataaaaagtgttattttcactttaaaattttc- 36545178  T
Q  185 nnnnnnagtttccttaaccagtgcccctagggcaccggttaaca 228  Q
          |||||| ||||||||||||||  |||||||||||||||    
T  36545177 ctttttagtttctttaaccagtgccccgggggcaccggttaaca 36545134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 235 - 301
Target Start/End: Complemental strand, 4395323 - 4395256
Alignment:
Q  235 atttgcgaaatatacgtgtagactatatccagctcttgagatttgttctaaatgaaa-caacaacacc 301  Q
    |||||| |||| || |||||||| ||||||| ||||||||||||||||||||| ||| ||||||||||    
T  4395323 atttgcaaaatttatgtgtagaccatatccaactcttgagatttgttctaaatcaaagcaacaacacc 4395256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 59 - 235
Target Start/End: Complemental strand, 9799375 - 9799198
Alignment:
Q  59 aaggataatgttaaccagtgccccgag-cactggttaaagagccaaatgtggtaagtattacattgaaatttgtgctgtcaacttttgaaaagtataaaa 157  Q
    |||| ||||||||||||||| || | | |||||||||| |||  |||||||||||||||||||||| || ||||| |||||||| |||||||||||||||    
T  9799375 aagggtaatgttaaccagtgtccaggggcactggttaaggagttaaatgtggtaagtattacattggaacttgtgttgtcaactcttgaaaagtataaaa 9799276  T
Q  158 agtgttacttttattttaaaactttcnnnnnnnagtttccttaaccagtgcccctagggcaccggttaacatcaccca 235  Q
    |||||||| |||||||||| ||||||       ||||||||||||||||||| |  |||||| ||||||||| |||||    
T  9799275 agtgttacctttattttaagactttcaatttttagtttccttaaccagtgccacgggggcactggttaacatgaccca 9799198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 64 - 181
Target Start/End: Complemental strand, 40995942 - 40995823
Alignment:
Q  64 taatgttaaccagtgc--cccgagcactggttaaagagccaaatgtggtaagtattacattgaaatttgtgctgtcaacttttgaaaagtataaaaagtg 161  Q
    ||||||||||||||||  || ||||| || |||||||  ||||||| |||||||||||||||||||||||| |||||||| || ||||  ||||||||||    
T  40995942 taatgttaaccagtgcttccagagcattgattaaagaatcaaatgtagtaagtattacattgaaatttgtgttgtcaactcttcaaaaacataaaaagtg 40995843  T
Q  162 ttacttttattttaaaactt 181  Q
    ||| ||| ||||||||||||    
T  40995842 ttattttcattttaaaactt 40995823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 114 - 183
Target Start/End: Complemental strand, 7222913 - 7222846
Alignment:
Q  114 tattacattgaaatttgtgctgtcaacttttgaaaagtataaaaagtgttacttttattttaaaactttc 183  Q
    |||||||||||||||||||||||  ||| || ||||  ||||||||||||||||||||||||||| ||||    
T  7222913 tattacattgaaatttgtgctgt--actattcaaaaacataaaaagtgttacttttattttaaaattttc 7222846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 101 - 234
Target Start/End: Original strand, 30478408 - 30478540
Alignment:
Q  101 caaatgtggtaagtattacattgaaatttgtgctgtcaacttttgaaaagtataaaaagtgttacttttattttaaaactttcnnnnnnnagtttcctta 200  Q
    ||||||| ||||||||| | |||||| |||| ||||||| || | ||||| | ||||||| ||| ||| |||||||| |||||       || |||||||    
T  30478408 caaatgtagtaagtattgcgttgaaacttgtactgtcaatttctcaaaagcacaaaaagtattattttcattttaaa-ctttccttttttaggttcctta 30478506  T
Q  201 accagtgcccctagggcaccggttaacatcaccc 234  Q
    ||| ||||||| ||||||||||||||||| ||||    
T  30478507 acccgtgccccgagggcaccggttaacatgaccc 30478540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 111 - 178
Target Start/End: Original strand, 45397512 - 45397578
Alignment:
Q  111 aagtattacattgaaatttgtgctgtcaacttttgaaaagtataaaaagtgttacttttattttaaaa 178  Q
    ||||||||||||||||||| || ||||||||| | |||||| | |||||||||| |||||||||||||    
T  45397512 aagtattacattgaaatttttgttgtcaacttctaaaaagt-ttaaaagtgttatttttattttaaaa 45397578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 182
Target Start/End: Complemental strand, 12000223 - 12000142
Alignment:
Q  101 caaatgtggtaagtattacattgaaatttgtgctgtcaacttttgaaaagtataaaaagtgttacttttattttaaaacttt 182  Q
    ||||||| |||||| || ||||| |||||||||||||||| | | ||||| ||||||| | ||| ||| | |||||||||||    
T  12000223 caaatgtagtaagtgttgcattggaatttgtgctgtcaacatctcaaaagcataaaaaatattattttcactttaaaacttt 12000142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 35467831 - 35467786
Alignment:
Q  59 aaggataatgttaaccagtgccccgagcactggttaaagagccaaa 104  Q
    |||| |||||||||||||||||||| ||||||||||| ||| ||||    
T  35467831 aagggtaatgttaaccagtgccccgggcactggttaaggagtcaaa 35467786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 178
Target Start/End: Complemental strand, 15111968 - 15111876
Alignment:
Q  86 cactggttaaagagccaaatgtggtaagtattacattgaaatttgtgctgtcaacttttgaaaagtataaaaagtgttacttttattttaaaa 178  Q
    |||||||||| ||  ||||| | |||||| ||| ||| ||| ||||| ||||||||  | |||| |||||||||||||| ||| |||||||||    
T  15111968 cactggttaaggaatcaaatctagtaagttttatattaaaacttgtgttgtcaactcctaaaaaatataaaaagtgttattttcattttaaaa 15111876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0272 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 64 - 234
Target Start/End: Original strand, 6063 - 6235
Alignment:
Q  64 taatgttaaccagtgc--cccgagcactggttaaagagccaaatgtggtaagtattacattgaaatttgtgctgtcaacttttgaaaagtataaaaagtg 161  Q
    ||||||||||||||||  || | ||||||||||| ||| ||||||| ||||||||| ||||| ||||| |||||||||||||| ||||  ||||||||||    
T  6063 taatgttaaccagtgcttccggggcactggttaaggagtcaaatgtagtaagtattgcattggaatttatgctgtcaacttttcaaaaacataaaaagtg 6162  T
Q  162 ttacttttattttaaaactttcnnnnnnnagtttccttaaccagtgcccctagggcaccggttaacatcaccc 234  Q
    ||||||| ||||||||||||||       ||||||||||||| |||||||| |  ||||||||||||| ||||    
T  6163 ttactttcattttaaaactttctttttttagtttccttaaccggtgcccctggaacaccggttaacataaccc 6235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 58 - 235
Target Start/End: Original strand, 19328775 - 19328950
Alignment:
Q  58 aaaggataatgttaaccagtgccccga--gcactggttaaagagccaaatgtggtaagtattacattgaaatttgtgctgtcaacttttgaaaagtataa 155  Q
    |||||||||||||||||||||    ||  ||| |||||||  || ||||||||||||||||||||||| || ||||||| |||||| || ||||||||||    
T  19328775 aaaggataatgttaaccagtg----gaaggcattggttaagaagtcaaatgtggtaagtattacattggaacttgtgctatcaactcttcaaaagtataa 19328870  T
Q  156 aaagtgttacttttattttaaaactttcnnnnnnnagtttccttaaccagtgcccctagggcaccggttaacatcaccca 235  Q
    ||||||||||||| ||||||||||||         |||||||||||||||||||||  |||||||||||||||| |||||    
T  19328871 aaagtgttactttcattttaaaacttcatttttttagtttccttaaccagtgcccccggggcaccggttaacatgaccca 19328950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 86 - 183
Target Start/End: Original strand, 27756450 - 27756547
Alignment:
Q  86 cactggttaaagagccaaatgtggtaagtattacattgaaatttgtgctgtcaacttttgaaaagtataaaaagtgttacttttattttaaaactttc 183  Q
    |||||||||| ||  ||||||| |||||||||||||||||||||||| |||||||| || ||||| ||||||||||||| ||| ||||||||| ||||    
T  27756450 cactggttaaggaatcaaatgtagtaagtattacattgaaatttgtgttgtcaactcttcaaaagcataaaaagtgttattttcattttaaaagtttc 27756547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 18049952 - 18050011
Alignment:
Q  1 tacatctattgtacaattcacaaatcatcattttgatggggtgttactcaaatttgcaaa 60  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  18049952 tacatctgttgtacaattcacaaatcatcattttgatggtgtgttactcaaatttgcaaa 18050011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 3913647 - 3913724
Alignment:
Q  101 caaatgtggtaagtattacattgaaatttgtgctgtcaacttttgaaaagtataaaaagtgttacttttattttaaaa 178  Q
    ||||||||||||||||||| ||| || ||||| ||| |||| || ||||||||||||||||||||||| |||||||||    
T  3913647 caaatgtggtaagtattacgttggaacttgtgttgttaactcttcaaaagtataaaaagtgttactttcattttaaaa 3913724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 178
Target Start/End: Original strand, 38509880 - 38510000
Alignment:
Q  58 aaaggataatgttaaccagtgccccgagcactggttaaagagccaaatgtggtaagtattacattgaaatttgtgctgtcaacttttgaaaagtataaaa 157  Q
    ||||| ||||||||||| ||| || || |||| ||||| ||  |||||||  ||| |||| ||||| || ||||| ||||||||  | |||||||| |||    
T  38509880 aaagggtaatgttaaccggtgtccggaacacttgttaaggaatcaaatgtaataaatattgcattggaacttgtgttgtcaactcctcaaaagtatgaaa 38509979  T
Q  158 agtgttacttttattttaaaa 178  Q
    ||||||| |||||||||||||    
T  38509980 agtgttatttttattttaaaa 38510000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 235 - 301
Target Start/End: Original strand, 18050003 - 18050070
Alignment:
Q  235 atttgcgaaatatacgtgtagactatatccagctcttgagatttgttctaaatgaaa-caacaacacc 301  Q
    |||||| |||| || |||||||| ||||||| ||||||||||||||||||||| ||| ||||||||||    
T  18050003 atttgcaaaatttatgtgtagaccatatccaactcttgagatttgttctaaatcaaagcaacaacacc 18050070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 182
Target Start/End: Complemental strand, 4687425 - 4687363
Alignment:
Q  120 attgaaatttgtgctgtcaacttttgaaaagtataaaaagtgttacttttattttaaaacttt 182  Q
    |||| |||||||||| ||||||| | ||||| ||||||||||||| ||||| |||||||||||    
T  4687425 attggaatttgtgctatcaacttctcaaaagcataaaaagtgttatttttactttaaaacttt 4687363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 3427861 - 3427938
Alignment:
Q  101 caaatgtggtaagtattacattgaaatttgtgctgtcaacttttgaaaagtataaaaagtgttacttttattttaaaa 178  Q
    ||||||| |||||||||  ||||||| ||||| |||||||| || ||||  ||||||||||||| ||| |||||||||    
T  3427861 caaatgtagtaagtattgtattgaaacttgtgttgtcaactcttcaaaaacataaaaagtgttattttcattttaaaa 3427938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 178
Target Start/End: Complemental strand, 25474715 - 25474657
Alignment:
Q  120 attgaaatttgtgctgtcaacttttgaaaagtataaaaagtgttacttttattttaaaa 178  Q
    ||||||||||||| |||||||| || ||||| ||||||| ||||| ||| |||||||||    
T  25474715 attgaaatttgtgttgtcaactcttcaaaagcataaaaaatgttattttcattttaaaa 25474657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 85 - 181
Target Start/End: Complemental strand, 30487048 - 30486952
Alignment:
Q  85 gcactggttaaagagccaaatgtggtaagtattacattgaaatttgtgctgtcaacttttgaaaagtataaaaagtgttacttttattttaaaactt 181  Q
    ||||||||||| ||| ||||||| ||||||||| ||||||||||||||| |||||||||| |||| |||||||| ||||||||||||||||||||||    
T  30487048 gcactggttaaggagtcaaatgtcgtaagtattgcattgaaatttgtgccgtcaacttttaaaaaatataaaaaatgttacttttattttaaaactt 30486952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 228
Target Start/End: Complemental strand, 37720635 - 37720509
Alignment:
Q  101 caaatgtggtaagtattacattgaaatttgtgctgtcaacttttgaaaagtataaaaagtgttacttttattttaaaactttcnnnnnnnagtttcctta 200  Q
    ||||||| ||||||||| ||||| ||  |||||||||||||  | ||||| ||||||||||||| ||| | ||||||||||||       ||||||||||    
T  37720635 caaatgtagtaagtattgcattggaacatgtgctgtcaactcctcaaaagcataaaaagtgttattttcactttaaaactttc-ctttttagtttcctta 37720537  T
Q  201 accagtgcccctagggcaccggttaaca 228  Q
    ||||||||||   ||||| |||||||||    
T  37720536 accagtgccctgggggcatcggttaaca 37720509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 88 - 183
Target Start/End: Complemental strand, 28710485 - 28710390
Alignment:
Q  88 ctggttaaagagccaaatgtggtaagtattacattgaaatttgtgctgtcaacttttgaaaagtataaaaagtgttacttttattttaaaactttc 183  Q
    |||||||| ||  ||||||| ||||||||||||||| |||||||||||  ||||  | ||||  ||||||| ||||| ||| | ||||||||||||    
T  28710485 ctggttaaggaatcaaatgtagtaagtattacattggaatttgtgctgctaactcctcaaaaacataaaaattgttattttcactttaaaactttc 28710390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 40234663 - 40234707
Alignment:
Q  194 ttccttaaccagtgcccctagggcaccggttaacatcacccattt 238  Q
    ||||||||||||||||||  | |||||||||||||| ||||||||    
T  40234663 ttccttaaccagtgccccgggagcaccggttaacatgacccattt 40234707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 64 - 211
Target Start/End: Complemental strand, 28988512 - 28988361
Alignment:
Q  64 taatgttaaccagtgccccgag--cactggttaaagagccaaatgtggtaagtattacattgaaatttgtgctgtcaacttttgaaaag--tataaaaag 159  Q
    ||||||||||||||| |||  |  |||||||||| ||| |||||||||||| |||||||||||||||||||  |||||||||| |||||  || ||||||    
T  28988512 taatgttaaccagtgtcccagggccactggttaaggagtcaaatgtggtaattattacattgaaatttgtgtcgtcaacttttcaaaagcataaaaaaag 28988413  T
Q  160 tgttacttttattttaaaactttcnnnnnnnagtttccttaaccagtgcccc 211  Q
    ||||||||| ||||||||| || |       |||||||||||||||||||||    
T  28988412 tgttactttcattttaaaatttcctttttttagtttccttaaccagtgcccc 28988361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 65 - 229
Target Start/End: Original strand, 21067574 - 21067739
Alignment:
Q  65 aatgttaaccagtgcc-ccgagcactggttaaagagccaaatgtggtaagtattacattgaaatttgtgctgtcaacttttgaaaagtataaaaagtgtt 163  Q
    |||||||||||||||| |||   ||||||||| ||| ||||||| |||||||||||||||||| ||||| ||||| || || ||||| |||||||||  |    
T  21067574 aatgttaaccagtgcctccggaaactggttaaggagtcaaatgtagtaagtattacattgaaacttgtgttgtcatctcttcaaaagcataaaaagtagt 21067673  T
Q  164 acttttattttaaaactttcnnnnnnnagtttccttaaccagtgcccctagggcaccggttaacat 229  Q
    ||||| |||||||||||| |       |||||||||||||||||| ||   |||| ||||||||||    
T  21067674 actttcattttaaaacttccttttttgagtttccttaaccagtgcaccggaggcatcggttaacat 21067739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 58 - 207
Target Start/End: Original strand, 24233126 - 24233277
Alignment:
Q  58 aaaggataatgttaaccagtgcccc--gagcactggttaaagagccaaatgtggtaagtattacattgaaatttgtgctgtcaacttttgaaaagtataa 155  Q
    ||||| ||||||||||||||| |||  || |||| ||||| ||| |||||||  |||||||| ||||| || ||||||||||||||||| |||| |||||    
T  24233126 aaagggtaatgttaaccagtgtccccggaacactagttaaggagtcaaatgtaataagtattgcattggaacttgtgctgtcaacttttcaaaaatataa 24233225  T
Q  156 aaagtgttacttttattttaaaactttcnnnnnnnagtttccttaaccagtg 207  Q
    ||||||||||||| || || |||||| |       |||||||||||||||||    
T  24233226 aaagtgttactttcatcttcaaacttcctttttttagtttccttaaccagtg 24233277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 112 - 181
Target Start/End: Complemental strand, 39753387 - 39753318
Alignment:
Q  112 agtattacattgaaatttgtgctgtcaacttttgaaaagtataaaaagtgttacttttattttaaaactt 181  Q
    ||||||||||||||| |||||||||||||| || ||||| ||||||||| ||||||| ||||||||||||    
T  39753387 agtattacattgaaacttgtgctgtcaactcttcaaaagcataaaaagtattactttcattttaaaactt 39753318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 19187144 - 19187217
Alignment:
Q  110 taagtattacattgaaatttgtgctgtcaacttttgaaaagtataaaaagtgttacttttattttaaaactttc 183  Q
    ||||| ||||||||||||||||| |||||||| || ||||| ||||||||||||  ||| ||||||||||||||    
T  19187144 taagttttacattgaaatttgtgttgtcaactcttcaaaagcataaaaagtgttgttttcattttaaaactttc 19187217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 109 - 238
Target Start/End: Complemental strand, 36603769 - 36603640
Alignment:
Q  109 gtaagtattacattgaaatttgtgctgtcaacttttgaaaagtataaaaagtgttacttttattttaaaactttcnnnnnnnagtttccttaaccagtgc 208  Q
    ||||||||| ||||| || ||||| |||||||| || ||||  ||||||||||| ||||| ||||||||||||||       || ||||||||| |||||    
T  36603769 gtaagtattgcattggaacttgtgttgtcaactcttcaaaaacataaaaagtgtcactttcattttaaaactttctttttttaggttccttaactagtgc 36603670  T
Q  209 ccctagggcaccggttaacatcacccattt 238  Q
    |||  ||| || ||||||||| ||||||||    
T  36603669 ccccggggtactggttaacatgacccattt 36603640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 91 - 211
Target Start/End: Original strand, 14122887 - 14123006
Alignment:
Q  91 gttaaagagccaaatgtggtaagtattacattgaaatttgtgctgtcaacttttgaaaagtataaaaagtgttacttttattttaaaactttcnnnnnnn 190  Q
    ||||| ||| ||||||||||||||||||| ||| ||| ||   |||||||| || ||||| ||| ||||||||||||| |||||||||||| |           
T  14122887 gttaaggagtcaaatgtggtaagtattaccttggaatatgat-tgtcaactattcaaaagcatataaagtgttactttcattttaaaacttccttctttt 14122985  T
Q  191 agtttccttaaccagtgcccc 211  Q
    |||||||||||||||||||||    
T  14122986 agtttccttaaccagtgcccc 14123006  T

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Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 183
Target Start/End: Original strand, 1179953 - 1180025
Alignment:
Q  111 aagtattacattgaaatttgtgctgtcaacttttgaaaagtataaaaagtgttacttttattttaaaactttc 183  Q
    |||||||||||||||| || || ||||||||| | ||||  ||||||||||||| ||||||||||||| ||||    
T  1179953 aagtattacattgaaacttatgttgtcaacttctaaaaaacataaaaagtgttatttttattttaaaattttc 1180025  T

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Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 38282505 - 38282569
Alignment:
Q  114 tattacattgaaatttgtgctgtcaacttttgaaaagtataaaaagtgttacttttattttaaaa 178  Q
    ||||||||| ||||||||| |||||||| || |||| |||||||||||||| ||| |||||||||    
T  38282505 tattacattaaaatttgtgttgtcaactctttaaaaatataaaaagtgttattttcattttaaaa 38282569  T

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Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 102 - 183
Target Start/End: Original strand, 39031661 - 39031741
Alignment:
Q  102 aaatgtggtaagtattacattgaaatttgtgctgtcaacttttgaaaagtataaaaagtgttacttttattttaaaactttc 183  Q
    ||||||||||| ||||||||| |||||| ||||||||| | || ||||  ||||||| | ||||||| ||||||||||||||    
T  39031661 aaatgtggtaaatattacattaaaatttatgctgtcaattattcaaaa-cataaaaaatattactttcattttaaaactttc 39031741  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 158
Target Start/End: Original strand, 6677065 - 6677137
Alignment:
Q  86 cactggttaaagagccaaatgtggtaagtattacattgaaatttgtgctgtcaacttttgaaaagtataaaaa 158  Q
    |||||||||| ||  ||||||| |||||| ||| ||||||||||||| | |||||| || ||||| |||||||    
T  6677065 cactggttaaggaatcaaatgtagtaagttttatattgaaatttgtgttctcaactcttcaaaagcataaaaa 6677137  T

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Target: scaffold0316 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 236
Target Start/End: Original strand, 1280 - 1415
Alignment:
Q  101 caaatgtggtaagtattacattgaaatttgtgctgtcaacttttgaaaagtataaaaagtgttacttttattttaaaactttcnnnnnnnagtttcctta 200  Q
    ||||||| ||||||||| |||||  | ||||| ||||||||  | ||||| ||||||| ||||| ||| ||||||||| ||||       || |||||||    
T  1280 caaatgtagtaagtattgcattggtacttgtgttgtcaactcatcaaaagcataaaaaatgttattttcattttaaaaatttctttttttaggttcctta 1379  T
Q  201 accagtgcccctagggcaccggttaacatcacccat 236  Q
     || |||||||  |||||||||||||||| ||||||    
T  1380 gcccgtgccccaggggcaccggttaacatgacccat 1415  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 183
Target Start/End: Complemental strand, 17170745 - 17170671
Alignment:
Q  109 gtaagtattacattgaaatttgtgctgtcaacttttgaaaagtataaaaagtgttacttttattttaaaactttc 183  Q
    |||||| |||||||  ||||| || ||| || |||| |||| |||||||||||||| ||||||||||||| ||||    
T  17170745 gtaagttttacattagaatttatgttgttaattttttaaaaatataaaaagtgttatttttattttaaaattttc 17170671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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